PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D06G1326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28061.7 Da PI: 9.6273 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6.1e-16 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l+ +v+++G +W++ a+ g+ R++k+c++rw +yl Gh_D06G1326 12 KGPWSSEEDHKLIAYVTRYGIWNWTAMAKAAGLQRSGKSCRLRWMNYL 59 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.8e-18 | 65 | 108 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+e ++d++++lG++ W+ Ia++++ gRt++++k++w++ Gh_D06G1326 65 RGNFTREEEETILDLHERLGNR-WSVIASRLP-GRTDNEIKNYWHT 108 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.255 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-10 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-8 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 25.035 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-16 | 65 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.01E-12 | 67 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 67 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MAKSDEKPTL RKGPWSSEED HKLIAYVTRY GIWNWTAMAK AAGLQRSGKS CRLRWMNYLR 60 PGIKRGNFTR EEEETILDLH ERLGNRWSVI ASRLPGRTDN EIKNYWHTRL SKRLRHNLEP 120 KSGPFQIPSV ETEQKSSPEI ALPPAIAIKE SNVETSGAIQ LPLSSSNPAM KIDENQTNCS 180 FKAYGGLQNI FEQTFTAEGS YIVENSKAIY SVPGVSTATS QLARFQYLGN SCTDVWRKFL 240 TNEIIYGG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 8 | 114 | 3 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016681523.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1U8IYT5 | 0.0 | A0A1U8IYT5_GOSHI; myb-related protein Myb4-like | ||||
STRING | Gorai.010G148300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-51 | myb domain protein 14 |