PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1277
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 404aa    MW: 45841.2 Da    PI: 7.1299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1277genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49371622128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +  ++++ 
  Gh_D06G1277  37 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRGENSRS 133
                  79***************************.89***************888889********************************************* PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  +glkktLvfy+g+apkg +++W+m+eyrl
  Gh_D06G1277 134 IGLKKTLVFYSGKAPKGIRSSWIMNEYRL 162
                  ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-5635182IPR003441NAC domain
PROSITE profilePS5100555.40836183IPR003441NAC domain
PfamPF023651.1E-2438162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAIASMSNDN TSNVDLDFNN SNSSSSSKDD HEQDTVMPGF RFHPTEEELV EFYLRRKVEG  60
KRFNVELITF LDLYRYDPWE LPAMAAIGEK EWFFYVPRDR KYRNGDRPNR VTTSGYWKAT  120
GADRMIRGEN SRSIGLKKTL VFYSGKAPKG IRSSWIMNEY RLPHHETERY QKAEISLCRV  180
YKRAGVEDHP SLPRCLPTRA LTSSRGVLQS EKKYSQAQDA AQQAMERFQG FGGGQSQPQM  240
EIEKISETDG SSSSTSDVTT ALGLSKQNVY RPTALIRTTL GLPSGIMEEE GLFLNQSKQG  300
CTSLLPNSTA LFQLGSSSVS SNVVDDLHRL VSYQQAAMNP LQYYNTYQQQ QQQPEFSTLP  360
PQSQAQQLSL NVLPSSLPLT TFSDRLWEWS PIPEPSREFT NPFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-542918310165NO APICAL MERISTEM PROTEIN
1ut4_B2e-542918310165NO APICAL MERISTEM PROTEIN
1ut7_A2e-542918310165NO APICAL MERISTEM PROTEIN
1ut7_B2e-542918310165NO APICAL MERISTEM PROTEIN
4dul_A2e-542918310165NAC domain-containing protein 19
4dul_B2e-542918310165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472430.0KC847243.1 Gossypium hirsutum NAC domain protein NAC66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313847.10.0NAC domain-containing protein 2-like
RefseqXP_012452539.10.0PREDICTED: NAC domain-containing protein 2-like
SwissprotQ9ZVP81e-119NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A1U8J0A90.0A0A1U8J0A9_GOSHI; NAC domain-containing protein 2-like
STRINGGorai.010G142400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-114NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]