PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G1002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 979aa MW: 108196 Da PI: 5.2637 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ed++l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Gh_D06G1002 39 KGQWTAAEDDILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 66.3 | 5.6e-21 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l Gh_D06G1002 91 KGPWSKEEDELIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.5 | 2e-15 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+eE++ lv+a++ +G++ W+ + ++ gRt++ +k++w+ Gh_D06G1002 143 REAWTQEEELALVRAHQIFGNR-WAELTKFLP-GRTDNAIKNHWN 185 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.701 | 34 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-14 | 35 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 40 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.63E-12 | 42 | 85 | No hit | No description |
PROSITE profile | PS51294 | 34.005 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-31 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-20 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-19 | 91 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-28 | 93 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-17 | 93 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-21 | 140 | 192 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 142 | 190 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.759 | 142 | 192 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.3E-13 | 143 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-11 | 145 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 979 aa Download sequence Send to blast |
MESDIKVSTP SVGLGSSDGA QRIRPVHGRT SGPTRRSTKG QWTAAEDDIL SKAVQRFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKYG PKKWSTIAQH 120 LPGRIGKQCR ERWHNHLNPS INREAWTQEE ELALVRAHQI FGNRWAELTK FLPGRTDNAI 180 KNHWNSSVKK KLDSYIASGL LEQLQFPVLA NQSQPMPSSS LRMQSTVDDS GAKCRKESED 240 ISECSQESNM IGCSQSASDL ATAAVHTREQ FHLTEMPGVS KERNSSSAPC SEEYYPSFED 300 VNFSIPEIPC EVGYSSSGDY QFGGHMLITD DECCRVLFSE AVNDGCFASE NFTQGSNIVE 360 LGGCTNISLC QPSDIQPSET GKTPASQSGL PSRSEVLPTS CCQSFASPSL LSVEDGTLMY 420 GQEQSQLNCQ PFGTQEQEFT MNAHDGFIFT NDDHTNDTDL QEQTYLAKDS QKLVSVNSIG 480 SELSAMLTCP IADDKRNLPV EEDVRGLCYE PPRFPSLDVP FFSCDLVPSG GNMQQEYSPL 540 GIRQLMMSSM NCISPFRLWD SPSRDGSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSER 600 RREKKLEIDM TSSLTKDFSR LDVMFDESVT GNTSQVSPSK RKTNARTSIE EKENVYQEFH 660 GSLDNGGEYT EPIDDEAQKK DSNGTNSPGN IKKEAWGIDI KDKTDAHASE KIIQQPSAVL 720 IEHNVNDLLL FSPDRVGLKA DQPLLPSSIR TPRSQCHKSF RAISNQGLSG NACLIVSSPT 780 LKVKNSDGHS ISVTAVQCTN SPATLENLAD NAGIDTAIEN YNIFGGTPFR RSIESPSAWK 840 SPWFINSFIP GPRIDTEITI EDIGYVMSPA ERSYDAIGLI KQLSEHTAAA YADALEVLGN 900 ETPKSIVKGR LSNNRNMDKE NNGVENSSHL TSNILAERRI LDFSECETPR KETENGKSST 960 TAATVSFSSP SSYLLKGCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-68 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-68 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 598 | 605 | ERRREKKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16109 | 0.0 | boll| ovule| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016683109.1 | 0.0 | PREDICTED: uncharacterized protein LOC107901564 | ||||
Refseq | XP_016683110.1 | 0.0 | PREDICTED: uncharacterized protein LOC107901564 | ||||
Refseq | XP_016683111.1 | 0.0 | PREDICTED: uncharacterized protein LOC107901564 | ||||
Refseq | XP_016683112.1 | 0.0 | PREDICTED: uncharacterized protein LOC107901564 | ||||
TrEMBL | A0A1U8IYG3 | 0.0 | A0A1U8IYG3_GOSHI; uncharacterized protein LOC107901564 | ||||
STRING | Gorai.010G110000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 0.0 | myb domain protein 3r-4 |