PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0987
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 633aa    MW: 69441 Da    PI: 7.7031
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0987genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.33e-13143182242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++k+CnCk+s+Clk+YCeCf++g +C+  C+C +C+N+ e+
  Gh_D06G0987 143 KQKQCNCKNSRCLKLYCECFSSGFYCNG-CNCLNCQNNVEN 182
                  89**************************.********9875 PP
2TCR50.15.5e-16227266140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks+ClkkYCeCf+a+  Cse+CkC dCkN e
  Gh_D06G0987 227 KHNKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFE 266
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.1E-14142182IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.314143267IPR005172CRC domain
PfamPF036385.6E-10144179IPR005172CRC domain
SMARTSM011143.3E-19227268IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-12230265IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MIGQGETVSD FTPKKLARQL DFTAECRASE NATLPDHPMQ LQSQPQPQWQ SQTPLPTKPQ  60
QQPQELQLRL CLQPQTVQSP QSPPVPLVQI RPPPPPSQPV TVMQRVPHPL QKLPPQTYQL  120
SKQESPRSRP RVHADAKDGT PKKQKQCNCK NSRCLKLYCE CFSSGFYCNG CNCLNCQNNV  180
ENEAARQEAV GTTLERNPNA FRPKIASSPH RPQDTRDDAH DVQLVGKHNK GCHCKKSSCL  240
KKYCECFQAN ILCSENCKCM DCKNFEGSEE RRALVHGDHN SMAYMQQANA AISGAVGSSG  300
FGIPVTSKKR KSEEIIFGLA VKDQSVHKIV QQQQQQQENH LRDLLATCSP LSTPLSGTAN  360
KESLGSSKFT YRSPLANILQ PQYVKELCSV LVLVSSEARR ALAAERSGKK DQQAKGGSIE  420
TTVSSNQMHE MSQNGNGVLS SATDDCESEN HGDANRSGDC GANEDSVQNG KPLSPRTRAL  480
MCDEEDTMFM AVGSPDLLTD RSQNITQKSL NGHECTEVYA EQESLVLTVF RDFLNQLITR  540
GSIKETRCFP SPLSEKRSEQ EPAENGAIKS GNQAVGQKLP YPNGIVKSPN PAPAEISQTL  600
SAATSVLNTD LPLKHESPIG KEDTKNVGIE GSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2914427611132Protein lin-54 homolog
5fd3_B2e-2914427611132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.27780.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6225211e-71JX622521.1 Gossypium hirsutum clone NBRI_GE69283 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449291.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1
TrEMBLA0A1U8PX410.0A0A1U8PX41_GOSHI; protein tesmin/TSO1-like CXC 6 isoform X1
STRINGGorai.010G108300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-128Tesmin/TSO1-like CXC domain-containing protein