PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 205aa MW: 23651.7 Da PI: 8.7933 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.6 | 4e-20 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l++++ ++G+++Wk+Ia++ g++R++k+c++rw +yl Gh_D06G0886 17 RGAWTAEEDQKLAQVIDLHGPKRWKSIAAKAGLKRSGKSCRLRWMNYL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ + +E++l+++++k+lG++ W++Ia +++ gRt++q+k++w+++l Gh_D06G0886 70 KGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNQIKNYWNSHL 115 68889*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.806 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-30 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-19 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-25 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-12 | 19 | 64 | No hit | No description |
SMART | SM00717 | 7.2E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.016 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.4E-15 | 70 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-26 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAMAPVTTKC NLKEVNRGAW TAEEDQKLAQ VIDLHGPKRW KSIAAKAGLK RSGKSCRLRW 60 MNYLRPNIKK GNISDQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNQIKNY WNSHLSKKIK 120 LNENRNKGSE IQEPVLDNSK GNETVFLPKG SEEGTSKRDD DYNSTPCLFG DTMSDFHSAE 180 ALNWEWMSQF FEINESWDYF AYDII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-31 | 14 | 119 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY115511 | 2e-52 | AY115511.1 Gossypioides kirkii myb-like transcription factor 3 (MYB3) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016682318.1 | 1e-152 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9SEI0 | 6e-51 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A1U8J161 | 1e-151 | A0A1U8J161_GOSHI; transcription factor MYB114-like | ||||
STRING | Gorai.010G096800.1 | 1e-151 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 3e-53 | myb domain protein 66 |