PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0713

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 247aa MW: 26960.7 Da PI: 10.5138

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0713	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	9e-14	112	156	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky Gh_D06G0713 112 PWTEEEHRIFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 156 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.532	3	18	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	3.8E-4	3	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	19.74	104	161	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-17	107	161	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-18	108	160	IPR006447	Myb domain, plants
SMART	SM00717	4.4E-10	109	159	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-11	109	155	IPR009057	Homeodomain-like
Pfam	PF00249	4.2E-11	112	156	IPR001005	SANT/Myb domain
CDD	cd00167	2.65E-9	112	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGRKCSHCGN IGHNSRTCTT FRSAAGMGSG LRLFGFQLQL DVSSPSVVSN LMMKKSFSMD 60 CLSSSPSPSP SPSPSSLSSS RVSVDENSDK TSIGYLSDGL MGRSPDRKKG VPWTEEEHRI 120 FLIGLEKLGK GDWRGISRNF VTTRTPTQVA SHAQKYFLRQ ATLNKKNRRS SLFDMVRSNS 180 MGGPPSLTKI PQLDLHHRHP MPVDCSNSQT NVAPDLELTL AAPRPALEEN KSSPTTTTLL 240 IRPISVT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.13869	0.0	boll

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109852308	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269\|PubMed:12172034}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393239	1e-135	GQ393239.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0204 SSR marker CGR5100 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016682496.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q7XC57	7e-49	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A1U8IWQ1	0.0	A0A1U8IWQ1_GOSHI; transcription factor MYB1R1-like
STRING	Gorai.010G081800.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5496	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	2e-60	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]