PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 32419.1 Da PI: 5.1248 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.7e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed+ l ++ +++G+g +W + +r+ g++R++k+c++rw++yl Gh_D06G0691 14 RGPWSPDEDDTLRNYLAKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.5 | 1.1e-11 | 69 | 139 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + G++ +W++Ia+ ++ gRt++++k++w++ Gh_D06G0691 69 GGFTDEEDNIICSLYSSIGSRqvsiqhlilmgdlfisennpilqyswfRWSLIAAQLP-GRTDNDIKNHWNT 139 569*******************************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.114 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.6E-21 | 14 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-8 | 16 | 62 | No hit | No description |
SMART | SM00717 | 1.2E-8 | 67 | 143 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 8.499 | 67 | 145 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.4E-9 | 69 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 70 | 145 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.6E-21 | 113 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.57E-6 | 117 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPD EDDTLRNYLA KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTDEEDNIIC SLYSSIGSRQ VSIQHLILMG DLFISENNPI LQYSWFRWSL 120 IAAQLPGRTD NDIKNHWNTK LKKKLFAAKS GVDQNSNNHE STITDSSTTS VPIEAEALVN 180 GSTTTTTSSS YMINMKYQQN YDYPGLVLDQ IDQFTLPGLM EYSITSTAND NYSMSSSSQE 240 VSILCNSSSF APENDSTAWF IDGGAEDQGI LLDQLDFEGP HYLFTASGQQ I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 14 | 145 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016755508.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
Swissprot | Q9FKL2 | 2e-66 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A2P5R571 | 0.0 | A0A2P5R571_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G079900.1 | 1e-162 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-68 | myb domain protein 36 |
Publications ? help Back to Top | |||
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