PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0622
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 352aa    MW: 38813.3 Da    PI: 7.5338
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0622genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462212591255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gh_D06G0622 221 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 259
                  6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.74E-6219263No hitNo description
SuperFamilySSF474595.5E-10219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-7223265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNRGVLQSSP LQQMTAGNLN WWNINTTMRP PPTTHLQPPP HFLPPSPTTL FPQFTPTPTS  60
SSSSSWNDNS QELPQSWSQL LFCGLMGEEE KGGIGQFQVQ PKKLENWEEQ ALQQTSNAIS  120
AVDVKQENPN NYVYGHANED FHHQANKPAW SHQIMATSSA LSPKSGVTSF SSKMLEFSGN  180
KADARQPHPD RSSECNSSAS GGAWKKARVQ PSATQSTFKV RKEKLGDRIT ALHQLVSPFG  240
KTDTASVLLE AIGYIRFLQS QIEALSLPYL GNGSGNIRQQ QPVQGERNCI FPEDPGRLLN  300
ENSMKRKGGP DRQECDEEPK KDLRSRGLCL VPVSCTLQVG SDNGADYWAP AL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.1090.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451397.10.0PREDICTED: transcription factor bHLH68-like isoform X3
SwissprotQ8S3D11e-105BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2V6Z10.0A0A0D2V6Z1_GOSRA; Uncharacterized protein
STRINGGorai.010G073600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.16e-97bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]