PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 576aa MW: 63382.7 Da PI: 6.5178 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.2 | 1.8e-24 | 116 | 217 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+ltpsd+++ g +++p+ +a+++ ++ + tlt++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+vvF+ ++ +++ Gh_D06G0360 116 FAKILTPSDANNGGGFSVPRFCADSIfppldynADPPVQ--TLTVTDVRGWVWEFRHIYRGTPRRHLLTTGWNKFVNQKKLIAGDSVVFM--RDCNGK 209 89*********************999****996545445..8************************************************..568999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++++v+r+ Gh_D06G0360 210 MFIGVRRA 217 9****985 PP | |||||||
2 | Auxin_resp | 77.8 | 2.7e-26 | 255 | 337 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a++a+++ +FevvY+Pr ++++Fvv++e ve+ l++ ++ G+R+km +etedss+ ++ +Gtv++ +d+ W +S+Wr+L Gh_D06G0360 255 VAERAAKGLPFEVVYYPRPGWTDFVVRAELVEAGLNIYWAGGTRVKMVVETEDSSRMTCfQGTVISGALSDSGPWIGSPWRML 337 678999****************************************************99**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.84E-29 | 110 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-33 | 112 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.02E-20 | 115 | 216 | No hit | No description |
Pfam | PF02362 | 4.6E-22 | 116 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-19 | 116 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.83 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.3E-23 | 256 | 337 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MPPSRPPAAE VRHVDLRIWR ACAGSSVQIP TVNSIVYYFP QGHVEQSCGS TPLLSSLVLS 60 RPLIPCVVSD VHCLADPRTD EVFIKLFLVP VEPSRLPNQF LDVNGEVEDP DKIVSFAKIL 120 TPSDANNGGG FSVPRFCADS IFPPLDYNAD PPVQTLTVTD VRGWVWEFRH IYRGTPRRHL 180 LTTGWNKFVN QKKLIAGDSV VFMRDCNGKM FIGVRRALKR GEGGGDSGRW REPTGGGATK 240 GDGRGRMTAE VVVEVAERAA KGLPFEVVYY PRPGWTDFVV RAELVEAGLN IYWAGGTRVK 300 MVVETEDSSR MTCFQGTVIS GALSDSGPWI GSPWRMLLVA WDELDLENVR RVNPWQVEIA 360 TSLPLQSSFP LAKKSKFSQE SGLADAEGEI MFPMTGLTNS TMRYMNPSLL NYNSFPAGMQ 420 GARQNHFHVQ GLTNHMSENT PMMSTDASSS NYWVPKLKRI STELNIGSSQ SDNLSPDSQS 480 SMVSFGTEFT ENAGCNLSKV GVNSFQLFGK TIHMKEPGGS MFGNVGSMED DSGKRYDEAV 540 SEKNSLDLSS TNNYSKLHDR IDVKSESASA FKGFSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-63 | 14 | 362 | 51 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016701405.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Refseq | XP_016701406.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Refseq | XP_016701407.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Swissprot | Q84WU6 | 1e-176 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A1U8KG10 | 0.0 | A0A1U8KG10_GOSHI; Auxin response factor | ||||
STRING | Gorai.010G046000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-164 | auxin response factor 17 |