PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0336

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 350aa MW: 38744.1 Da PI: 6.3693

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0336	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.4	1.1e-20	162	211	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Gh_D06G0336 162 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 211 59****9.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.22E-34	161	221	No hit	No description
SuperFamily	SSF54171	3.53E-23	162	220	IPR016177	DNA-binding domain
SMART	SM00380	7.0E-38	162	225	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.143	162	219	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.3E-32	162	220	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-11	163	174	IPR001471	AP2/ERF domain
Pfam	PF00847	3.5E-14	163	211	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-11	185	201	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAATMDFYSS SSDIYGGELM EALEPFMKSA SSSSSSSPSP SPSPSSYSPS PSPSPSTSYL 60 SFSSSQTQPN FYADGCCYSP AVDQFSGVQQ PQLGSTIGLN NLTQAQINQI QAQFLFQNNQ 120 PSYLYQNPQL NANPNTNHML SFLSPKPVPM KQMGSPPKPT KLYRGVRQRH WGKWVAEIRL 180 PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPN LRHQGSHIGG DFGEYKPLHS 240 SVDAKLQAIC ESLELNQKQG NNNKKKKSSK ENKVQLAEPE EKTVKVENSP SSLSPVLSEN 300 EGSTESSPLS DLTFSDFNEQ PWPEVVTSSE SFMLSKYPSY EIDWDSILKA

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAATMDFYSS SSDIYGGELM EALEPFMKSA SSSSSSSPSP SPSPSSYSPS PSPSPSTSYL  60
SFSSSQTQPN FYADGCCYSP AVDQFSGVQQ PQLGSTIGLN NLTQAQINQI QAQFLFQNNQ  120
PSYLYQNPQL NANPNTNHML SFLSPKPVPM KQMGSPPKPT KLYRGVRQRH WGKWVAEIRL  180
PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPN LRHQGSHIGG DFGEYKPLHS  240
SVDAKLQAIC ESLELNQKQG NNNKKKKSSK ENKVQLAEPE EKTVKVENSP SSLSPVLSEN  300
EGSTESSPLS DLTFSDFNEQ PWPEVVTSSE SFMLSKYPSY EIDWDSILKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-22	161	219	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2696	0.0	leaf\| ovule\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269\|PubMed:9192694}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016739429.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-13-like
Swissprot	Q8H1E4	1e-102	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A1U8NNB2	0.0	A0A1U8NNB2_GOSHI; ethylene-responsive transcription factor RAP2-13-like
STRING	Gorai.010G043200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2716	26	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	2e-80	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]