PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0273
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 406aa    MW: 44642.2 Da    PI: 5.1232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0273genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.00021354394954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r R ++i +  + Lr+l+P+      +K + +++L +A++Y+ksL
  Gh_D06G0273 354 KRLRIEKIQETVSVLRSLIPNG----EGK-DAIMVLGEAIDYLKSL 394
                  689******************6....244.569***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.918345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-6349400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-5355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVCQAASQTR FRALKYENGI AGSATIVVRV IACFQPLQDC QVCFFLCTKQ SLYERIRYPF  60
LLSMREGCGF SFPEQRFDWR SHDLSSLAAP HPLVQQNTNP QLVNSGIDMV SVPRTLPDYA  120
NPGIVPQLQV GQVNEPCGWF YCSPHYWQGL VPASTNPYEY HNEKIVSKAG SGCAQKRFLV  180
FDQSGDQTTM IFSSSFGTPI KCATWGSKSP AACNFNGKDP ITKVNPDLHS GPISSNVFDE  240
NGTNTQSEMH EDTEELNALL YSDDDSYYTD DEVTSAVHSP SRMTACPEQF EGGGTEKVAS  300
SIGPTKKRKL LNDGNDYLPL LTDAAISVNP SRCSEYVDDA DSSCANMESS SSNKRLRIEK  360
IQETVSVLRS LIPNGEGKDA IMVLGEAIDY LKSLKLKAKT LGLNAL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.32241e-152boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754518e-32HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755248e-32HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450228.10.0PREDICTED: transcription factor bHLH145
TrEMBLA0A0D2V5700.0A0A0D2V570_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.010G035900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1053059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.19e-08LJRHL1-like 2