PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0212
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 576aa    MW: 62370.6 Da    PI: 6.9474
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0212genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24232276145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Gh_D06G0212 232 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 276
                  79****************************************985 PP
2QLQ582.8e-20162198137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT++Q+++L++Q+l+yKy+++n P+P++Ll +i+k
  Gh_D06G0212 162 GPFTPSQWMELEHQALIYKYINSNEPIPSNLLIPIRK 198
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-12162198IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.94163198IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-15163197IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287232276IPR014977WRC domain
PfamPF088797.3E-21233275IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDIGGVVVGL EGFVGSETVV TSSLVSDPET KAKLYGSGFL KQERPGNNED VLLWGSSKLA  60
KTEGVSASEA MPLLLHDKNS LLRSNANATT SVFSDGVSAS QAMLSFSSAP KSRALSVDKS  120
SQNVTFPYFH LTSPASTRNT GYNNGGFNSE NMHGVLLGGD RGPFTPSQWM ELEHQALIYK  180
YINSNEPIPS NLLIPIRKAL GSTDFSSFSG GPLKTNTLGW GAFRLGFSNN TDPEPGRCRR  240
TDGKKWRCSR DAVADQKYCE RHINRGRHRS RKPVEGQSGH SAGATSTTTT KVMSTVSSAL  300
ASVVVPISGC SESNSLTVAQ QQFKNLQPVT APVNRLLVNK ETLGERLHES TLDLKSKENP  360
FLMPMQQLIT YEENLRNEFG VVFSDSLLNP SHNDSSLINC RTFGSSQDLI CQATESQHSL  420
REFMDDWPKS QSDRSTISWP EVDVKSDMTQ LSISIPMAAS DFMSSTSSPS NEKLSSSPLR  480
LSREFDTMHM GLGVGSVINE PNHKQANWIP ISWENSMGGP LGEVLYSTNS SALNLITCDD  540
WNNSPGQRLA SSPTGVLTKT TFGSVSNSSA GSSPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.159170.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5669781e-74AJ566978.1 Gossypium hirsutum microsatellite DNA mGhCIR029, clone CIR029.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016726935.10.0PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBLA0A1U8MJH40.0A0A1U8MJH4_GOSHI; growth-regulating factor 1-like isoform X1
STRINGGorai.010G027700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-103growth-regulating factor 1