PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0175
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 318aa    MW: 34917.9 Da    PI: 9.9266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0175genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31244302259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  Gh_D06G0175 244 HDDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVEDPRMLIVTYEGDHNHS 302
                  69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.0E-17194241IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33231302IPR003657WRKY domain
PROSITE profilePS5081131.169238304IPR003657WRKY domain
SuperFamilySSF1182901.44E-26241302IPR003657WRKY domain
SMARTSM007749.1E-37243303IPR003657WRKY domain
PfamPF031061.1E-26245301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTVELMMGHG GVGGGGNSFT VKMEETALKE AANAGIQGFE ELIRLMSKSQ QLCSQDVCFN  60
APSSSEPAME IQAVTDKTVS SFKKVISLLG RPRIGHARFR RAPLNHLPQQ QQIQVSKDEE  120
VSTFKPLCST PSYKLPPLPT KSSHVLKTGV LERGNSVMSS LTGDTDSIQH QPCFSLGFQF  180
TNPSSHGKPP LSSKRKCNSM DDVANLKCGS SSSARCHCSK KRKSRVKRVI RVPAVSNKMA  240
DIPHDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERAVEDPRM LIVTYEGDHN  300
HSHNITTDVP SALVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22231301271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.89550.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6510680.0HQ651068.1 Gossypium hirsutum WRKY17 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452137.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-95WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2P5WGC60.0A0A2P5WGC6_GOSBA; Uncharacterized protein
STRINGGorai.010G022600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.16e-83WRKY DNA-binding protein 7