PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9821.06 Da PI: 8.4339 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 6 | 52 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ +l+ +a + ++ +W a+ +g g+t +++k +++++ Gh_D06G0052 6 TWTPKQNKLFENALVIYDKEspdRWQNLANAVG-GKTVEEVKMHYYNL 52 7******************9*************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.682 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-7 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-13 | 5 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.02E-7 | 6 | 53 | No hit | No description |
Pfam | PF00249 | 6.5E-6 | 6 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-4 | 6 | 56 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MGSSSTWTPK QNKLFENALV IYDKESPDRW QNLANAVGGK TVEEVKMHYY NLVEDIKQIE 60 SGNVPLPPYG KKPGGGSKGY NCMDSVQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-25 | 2 | 78 | 6 | 81 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016728999.1 | 2e-60 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 8e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1U8MTW6 | 4e-59 | A0A1U8MTW6_GOSHI; protein RADIALIS-like 3 | ||||
TrEMBL | A0A2P5RB00 | 4e-59 | A0A2P5RB00_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G010000.1 | 2e-59 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-27 | RAD-like 6 |