PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 342aa MW: 37909.2 Da PI: 9.3427 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00015 | 225 | 263 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L+ l+ + +K + a++L +A+ YIk Lq Gh_D06G0034 225 RKEKLGDRIAALQHLVAPF-----GKTDTASVLMEAIGYIKFLQ 263 67788899999**999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.211 | 213 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-11 | 223 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.39E-5 | 223 | 267 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-9 | 227 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MESENVHHQH QLHHYNQLLV GSSSSSLPCY RVSGSPHSWT PTNTFNTSEF NHNGALLQPW 60 TNNEGTFNNP SQHKLMLKTV SSSFPMLSQS SEFYPNTHNL PPLPTKGSFS HIYPSINISN 120 LNQASSMEAF DLLSPSRLTK NSSFKHYSSE DHHHNLASFG HSHQQFQLSN QRLPCNNSPS 180 NISSSFNTET LEAKGSGNIL KEAKASTATK KSRLESRACP PFKVRKEKLG DRIAALQHLV 240 APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNR TSRSKHGGSM MEMGNEEETR 300 QDLKSRGLCL VPLSCMSYLT TDNGGGGSSG SFWPPPNFSR GF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016723080.1 | 0.0 | PREDICTED: transcription factor bHLH110-like isoform X2 | ||||
Swissprot | Q9SFZ3 | 1e-59 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A1U8M8J4 | 0.0 | A0A1U8M8J4_GOSHI; transcription factor bHLH110-like isoform X2 | ||||
STRING | Gorai.010G008200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9351 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 5e-53 | bHLH family protein |
Publications ? help Back to Top | |||
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