PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0029
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 306aa    MW: 35265.2 Da    PI: 8.6032
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0029genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-092402781854
                  HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  lF+   ++yp+ + +  L++++gLt++qV++WF N R +
  Gh_D06G0029 240 LFQHflHPYPTDSVKLMLSSQTGLTKNQVSNWFINARVR 278
                  5775569******************************88 PP
2BELL79.16.2e-26128198272
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  ++el++  +kL+ lleeV+ +Y++y++ +++v+s Fe ++g+g+a+ Yt+l l+a+ rhF  L+d i  +i
  Gh_D06G0029 128 KHELHITLTKLIGLLEEVETQYEKYNNRMEQVVSLFESIVGVGAARCYTALTLQAMCRHFGKLRDTILTRI 198
                  7899***************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.0E-1677196IPR006563POX domain
PfamPF075261.3E-2782194IPR006563POX domain
SMARTSM003891.1E-8222286IPR001356Homeobox domain
CDDcd000863.65E-11222283No hitNo description
Gene3DG3DSA:1.10.10.601.8E-26227287IPR009057Homeodomain-like
SuperFamilySSF466891.03E-16228289IPR009057Homeodomain-like
PfamPF059201.9E-16239278IPR008422Homeobox KN domain
PROSITE profilePS5007111.159241282IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MESRQTPNRT SRMLHHFDAY NTEISHTRHL MDLLGAPNDS YRHHRTQTLS LSLGSCMLGS  60
SFPGAEDSGD DYPFIGHPTT YVIGNSRYLI PAQSLLNELV NVGFKNIDET PKLSSEFFRS  120
KIVPSPDKHE LHITLTKLIG LLEEVETQYE KYNNRMEQVV SLFESIVGVG AARCYTALTL  180
QAMCRHFGKL RDTILTRINR IRTKVRHDFM HSNTLCVQRQ VWRPVRGLPQ TSVAILRSWL  240
FQHFLHPYPT DSVKLMLSSQ TGLTKNQVSN WFINARVRLW KPMIEEIYKE EFADSPQHVS  300
HDLIEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16228286563Homeobox protein Meis2
3k2a_B6e-16228286563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723092.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD12e-73BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2P5QY980.0A0A2P5QY98_GOSBA; Uncharacterized protein
STRINGGorai.010G007700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-75BEL1-like homeodomain 11