PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3920
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 426aa    MW: 46993.4 Da    PI: 6.2671
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3920genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.7e-083754082154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Gh_D05G3920 375 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 408
                  469*****************************87 PP
2ELK28.82.8e-10329350122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Gh_D05G3920 329 ELKHELKQGYKEKIVDIREEIL 350
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-17160204IPR005540KNOX1
PfamPF037901.9E-16162202IPR005540KNOX1
SMARTSM012562.5E-29216271IPR005541KNOX2
PfamPF037912.7E-21220270IPR005541KNOX2
PROSITE profilePS512139.969329349IPR005539ELK domain
PfamPF037899.9E-7329350IPR005539ELK domain
SMARTSM011886.1E-4329350IPR005539ELK domain
PROSITE profilePS5007111.742349412IPR001356Homeobox domain
SuperFamilySSF466896.42E-16351414IPR009057Homeodomain-like
SMARTSM003893.7E-11351416IPR001356Homeobox domain
CDDcd000861.63E-11352413No hitNo description
Gene3DG3DSA:1.10.10.603.4E-25356412IPR009057Homeodomain-like
PfamPF059209.8E-18369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAFHPNHLSQ DLPLHHFTVQ QQQTNQLPGT TAPNWLNTAL LRSQQESQPT QPHAHFSDPN  60
FLNLHTATTA SESTSASQAP NQWLSPSSSS LLQRNHSGVV DDVAAVAAAG GGVGRETMVA  120
VESGELKSSN SESMNNNNKS EGVAVESGGG GDGAVNWQNA RYKAEVLAHP LYEQLLSAHV  180
ACLRIATPVD QLPRIDAQLA QSLHVEAKYS ALGGGAQGLV GDDKELDQFM THYVLLLCSF  240
KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GRVSLGEGTG ATMSDDDEEQ IDSDANLFDG  300
SMEGPDSLGF GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG  360
DTTSVLKAWW QSHSKWPYPT EEDKAKLVQE TGLQLKQINN WFINQRKRNW HSSPSTSTVL  420
KNKRKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405425RKRNWHSSPSTSTVLKNKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689476.10.0PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_016689477.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1U8JGU00.0A0A1U8JGU0_GOSHI; homeobox protein knotted-1-like 3
STRINGGorai.009G060200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]