PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3848
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 904aa    MW: 99726.1 Da    PI: 6.5093
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3848genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.7e-24128229199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Gh_D05G3848 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 221
                  99*****************************8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Gh_D05G3848 222 LLLGIRRA 229
                  9****997 PP
2Auxin_resp120.81.1e-39254337183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaast+s F+++YnPras+seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Gh_D05G3848 254 AAHAASTNSRFTIFYNPRASPSEFVIPLTKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-21127228No hitNo description
SMARTSM010192.0E-24128230IPR003340B3 DNA binding domain
PfamPF023623.6E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548128230IPR003340B3 DNA binding domain
PfamPF065071.4E-34254337IPR010525Auxin response factor
PfamPF023095.2E-8761860IPR033389AUX/IAA domain
SuperFamilySSF542774.64E-7765846No hitNo description
PROSITE profilePS5174524.392771855IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MRLSSAGFSP QAPEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
EVDVHVPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLNPQEQKE AYLPAELGTP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAST NSRFTIFYNP RASPSEFVIP LTKYIKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGDRQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPA GLPSFHGIKD DGLGMNSPLM WLQGDAGRGM PSLNFPGIGV  420
TPWMQPRLDA ASMLGLQTDI HQAMAAAALQ EMRAVDPSKS ATTTLLQFQQ PQNLSCRPAA  480
LMQSQMLQQS QPQAFLQGVE DNQHQSQTQA QTQPPLVQQQ LQQQNSFNNH QHQQQLQHPL  540
SQQHQQLVDH QHISTGVSAM SQYTPASQSR SSPFQAIPSL CQQQSFSDSN GHTMTSPIIS  600
PLHGLLGSFP QDESSSLLNL PRSNPVITSA AWPSKRAAVE VLSSGSPQCV LPQVEQLGPT  660
QTNISHNSIS LPPFPGRECS IDQAGGTDPQ SHLLFGVNIE PSSLLLQNGM SSLRGVGSES  720
DSTTIPFSSN YASTAGTDFS VNPAMTPSSC IDELGFLQSP ENAGQENPQT RTFVKVYKSG  780
SFGRSLDISK FSSYNELRSE LARMFGLEGQ LEDPLRSGWQ LVFVDRENDV LLLGDDPWPE  840
FVNSVWCIKI LSPQEVQQMG KRGLELLNSV PVQRLSNGSC DDYASQQDSR NLSSGIASVG  900
SLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601635847388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.145550.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016688275.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1U8JDB50.0A0A1U8JDB5_GOSHI; Auxin response factor
STRINGGorai.009G152700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]