 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D05G3838 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
TCP |
| Protein Properties |
Length: 410aa MW: 45056.6 Da PI: 9.0065 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D05G3838 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 122.8 | 3.8e-38 | 84 | 237 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec.eaessss 80
g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a ai el+++ +++sa+ + +++ ++
Gh_D05G3838 84 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIAELPSLntsfpdtprqlsddgteqGFDSAE-VeLDGDPNN 180
689*************************************************************998888888888777666555553.344555555 PP
TCP 81 sasnsssg.kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
++n+s++ + +++a+s+ s+ s++s l+l++ e r kar+rar r ++++ +++k
Gh_D05G3838 181 YQQNQSQQhLSLSKSACSSTSEISKNSGLSLSRsENRVKARERARGRVAKEKGKEQK 237
5554444435666666999999999999*****9************77666655544 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MEIDEIQTQQ GSKFSRVGNG RSESSRMGQK GSDNYYPDDE EGREVMKRAS ANGGGGDALA 60
DTAAANRLRG WHHSSRIIRV SRASGGKDRH SKVWTSKGLR DRRVRLSVTT AIQFYDLQDR 120
LGYDQPSKAI EWLIKAAADA IAELPSLNTS FPDTPRQLSD DGTEQGFDSA EVELDGDPNN 180
YQQNQSQQHL SLSKSACSST SEISKNSGLS LSRSENRVKA RERARGRVAK EKGKEQKTDI 240
AHQQNVNPIS QNSSFTELLT CGIGSVSNKH TSPSPTASAR QNPRQWPVTQ MDYFTMGLLG 300
PSSSRNQSSG FPGQMQQPQP ILMPPFTVSG ESNQKLQHFS FVPNTDHMIP VATAQPVLGS 360
DYNLNFAISS GIAGFNRGTL QSNSPPFLPH HLQRFSFIEG SPPVENHHHH
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT4G18390.2 | 1e-63 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
