PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G3801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 439aa MW: 50856 Da PI: 7.3487 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00067 | 197 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C +rk++L+rH+r++ Gh_D05G3801 197 YFCEFCLNFMKRKEQLQRHMRKC 219 78*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54160 | 1.37E-22 | 47 | 164 | IPR016197 | Chromo domain-like |
Gene3D | G3DSA:2.30.30.270 | 3.3E-37 | 52 | 123 | No hit | No description |
Pfam | PF11717 | 4.5E-21 | 53 | 111 | IPR025995 | RNA binding activity-knot of a chromodomain |
CDD | cd00024 | 1.74E-6 | 66 | 112 | No hit | No description |
SMART | SM00298 | 1.7E-6 | 67 | 126 | IPR000953 | Chromo/chromo shadow domain |
Gene3D | G3DSA:2.30.30.270 | 3.3E-37 | 158 | 208 | No hit | No description |
PROSITE profile | PS51726 | 75.469 | 163 | 434 | IPR002717 | Histone acetyltransferase domain, MYST-type |
SuperFamily | SSF55729 | 2.24E-111 | 164 | 435 | IPR016181 | Acyl-CoA N-acyltransferase |
Gene3D | G3DSA:3.40.630.30 | 4.2E-73 | 222 | 365 | IPR016181 | Acyl-CoA N-acyltransferase |
Pfam | PF01853 | 3.0E-84 | 224 | 401 | IPR002717 | Histone acetyltransferase domain, MYST-type |
CDD | cd04301 | 0.00162 | 275 | 333 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043995 | Molecular Function | histone acetyltransferase activity (H4-K5 specific) |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MGSIDTPTIT QNGSTQSQAA AAPADDNQRP LASSNGAPES EATKKRRSGI LPLEVGTRVM 60 CRWRDGKYHP VKVIERRKLQ STEPSDYEYY VHYTEFNRRL DEWVKLEQLD LDSVETVVDE 120 KVEDKVASLK MTRHQKRKID ETHVEVGHEE LDAASLREHE EFTKVKNIAT IELGRYEIET 180 WYFSPFPPEY NDSLKLYFCE FCLNFMKRKE QLQRHMRKCD LKHPPGDEIY RSGTLSMFEV 240 DGKKNKVYGQ NLCYLAKLFL DHKTLYYDVD LFLFYVLCEC DDRGCHMVGY FSKEKHSEES 300 YNLACILTLP PYQRKGYGKF LIAFSYELSK KEGKVGTPER PLSDLGLLSY RGYWTRVLLD 360 ILKKHKGNIS IKELSDMTAI KAEDILTTLQ SLELIQYRKG QHVICADPKV LDRHLKAAGR 420 GGLEVDVSKL IWTPYKEQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4dnc_A | 1e-119 | 159 | 438 | 1 | 282 | Histone acetyltransferase KAT8 |
4dnc_B | 1e-119 | 159 | 438 | 1 | 282 | Histone acetyltransferase KAT8 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2551 | 0.0 | boll| ovule| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves, stems, roots and, at higher levels in developing flowers, particularly in the anthers and gynoecia (PubMed:19040736). Constitutively expressed in all tissues, predominantly in shoot apical meristem (PubMed:23273925). {ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:23273925}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone acetyltransferase which may be involved in transcriptional activation. Acetylates 'Lys-5' of histone H4 (H4K5ac) (PubMed:17877703, PubMed:19040736, PubMed:22170978, PubMed:23273925). Essential for gametophyte development (PubMed:19040736). Involved in DNA repair after UV-B exposure (PubMed:22170978). Negative regulator of flowering controlling the H4K5ac levels in the FLC chromatin (PubMed:23273925). {ECO:0000269|PubMed:17877703, ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:22170978, ECO:0000269|PubMed:23273925}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated upon UV-B exposure. {ECO:0000269|PubMed:22170978}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016687062.1 | 0.0 | PREDICTED: histone acetyltransferase of the MYST family 1 isoform X1 | ||||
Swissprot | Q9FLF7 | 0.0 | MYST1_ARATH; Histone acetyltransferase of the MYST family 1 | ||||
TrEMBL | A0A1U8J9Q3 | 0.0 | A0A1U8J9Q3_GOSHI; Histone acetyltransferase | ||||
STRING | Gorai.009G242400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4806 | 5 | 6 |