PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G3693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 924aa MW: 103811 Da PI: 5.6386 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.5 | 5.9e-05 | 697 | 757 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq++++e++ ++ +++++ ++ A+kl ++t +q ++W Nr+a+ Gh_D05G3693 697 KRKRTIMNDEQVTIMERALLDEPEMQRNTalIQSWADKLshhgsEVTCSQLRNWLNNRKAR 757 79******************988887654449****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.782 | 694 | 761 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-4 | 696 | 765 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 697 | 764 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.60E-4 | 697 | 760 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0060195 | Biological Process | negative regulation of antisense RNA transcription | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 924 aa Download sequence Send to blast |
MRQGEGEAIS TVEQAIDLIS VVKEIHGLNS QELNKLLRDS ENFTILFVTE QGLDVKIDVE 60 KLAGFLPLHL IAVLVSSDRD EALLRYLLCG IRILHSLCEL APRHTKLEQI LLDDVKVSEQ 120 LIDLVFYVLI VLNDYRQDIH DSGPVPVLLS ALVACSFYLL TGCISSQWQD LALAMVAHPK 180 VDMFMDVACR AIHLVVRFLQ NKLSVQHIEI CVKSSSTTES MVNYLCQQCE ASLQFLQLLC 240 QQKPFRERIL KNKELCGKGG ILFLAQSILK LHAPDFAESS AIVAALSRLK AKVLSILLHL 300 CEAESISYLD EVASSPASLD LAKSVAFEVL ELLKTGLSKN PKHLSASSDR TYPMGLLQLN 360 AMRLADIFSD DSNFRSYITV YFTEILSAIF SLSHGDFLSM WCSADLPVRE EDATLYYEVF 420 AAAGWALDSV SSLDLSNTSN LEFTFIPNSN MSQASYVHQR TSLFVKIIAN LHCFVPNICE 480 EQERNLFLHK FLGCLRMDPS KLLLSYAFIT GPQKASAVQR NLRSLLSHAE SLIPTFLNED 540 DLQLLRVFFD QLQSLMNPSE FEENRVQDDR SLGGCSSPLL RREPPNLNNR NGNLKEEMSE 600 NSAFQEEHFY VRNSHMDQAD GVTRRDMMDD KDKSITPSGL KEIDRDVQNV ETSGSDTSST 660 KGKNAVDKLA ECHRENADVR EDEKVETVQT EEKHRRKRKR TIMNDEQVTI MERALLDEPE 720 MQRNTALIQS WADKLSHHGS EVTCSQLRNW LNNRKARLAR LSKDARPPPE PDNAFAGKQG 780 GPQQGHSLRA PDSPGQETTP SNTRGTRSMS RMNTSENSVA PEFVDYGAAE FVQCKPGQFI 840 VLVDGRGQEI GKGKVHQVQG KWWGKSLEES GACVVDVVDL KADRWVKLPY PSESTGTSFE 900 DAEKKLGVMR VMWDSNKIFM LRPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 694 | 699 | RRKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8823 | 0.0 | boll| leaf| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016684891.1 | 0.0 | PREDICTED: nodulin homeobox-like | ||||
Refseq | XP_016684892.1 | 0.0 | PREDICTED: nodulin homeobox-like | ||||
Refseq | XP_016684893.1 | 0.0 | PREDICTED: nodulin homeobox-like | ||||
TrEMBL | A0A1U8J8E2 | 0.0 | A0A1U8J8E2_GOSHI; nodulin homeobox-like | ||||
STRING | Gorai.009G451700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8179 | 6 | 7 |