PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G3509

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 414aa MW: 46881.1 Da PI: 7.4748

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G3509	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	419.4	3e-128	41	410	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+ +s+++ + + l+a+ + +s +g+p+qRl ay++e+L ar s+s++y+al+++e + ++ l+++++++e++P+lkf++++a Gh_D05G3509 41 LKQLLIACAKTLSENNIDKFNMLIAKARVAVSIYGEPIQRLGAYMMEGLVARKEASGSNIYRALHCQEPE---GKDLLTYMHTLYEIFPYLKFGYMAA 135 689****************************************************************9...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g p +RiTg+++p s+ + le++++rL ++ e++g+p+ef+ + +d++ ++L Gh_D05G3509 136 NGAIAEACRTEDRIHIIDFQIAQGTQWVTLLQALAARPGGGPYVRITGIDDPVSKyaRGGGLEAVERRLMELSEQFGIPVEFHG-MPVFAADITRDML 232 ************************************************99999999********************.6888999** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +vkpgEalaVn+ lqlh+++desv+++++rd +L++v+slsPkv+++veqe+++n+++Fl rf+e+leyy a+f+s+++ +pr+ +eri+vE+++l+r Gh_D05G3509 233 DVKPGEALAVNFPLQLHHTPDESVDVNNPRDGILRMVRSLSPKVITLVEQESNTNTAPFLPRFIETLEYYLAMFESIDEMMPRHRRERINVEQHCLAR 330 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ivnv+aceg+er+erhe ++kW++rl +aGF+p+pls+++++ ++ ll+ ++ + y++ e++g+++l Wkdr+L+s+SaW Gh_D05G3509 331 DIVNVIACEGKERVERHELFGKWKSRLAMAGFRPYPLSSYVNSVMRGLLKCYS-KHYTLVEKDGAMLLRWKDRNLISASAW 410 *********************************************9998.55*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.777	15	392	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-125	41	410	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MCQPQTTFFT NCRQSTEAAR VEKRLTAIED LSLQRIPPGN LKQLLIACAK TLSENNIDKF 60 NMLIAKARVA VSIYGEPIQR LGAYMMEGLV ARKEASGSNI YRALHCQEPE GKDLLTYMHT 120 LYEIFPYLKF GYMAANGAIA EACRTEDRIH IIDFQIAQGT QWVTLLQALA ARPGGGPYVR 180 ITGIDDPVSK YARGGGLEAV ERRLMELSEQ FGIPVEFHGM PVFAADITRD MLDVKPGEAL 240 AVNFPLQLHH TPDESVDVNN PRDGILRMVR SLSPKVITLV EQESNTNTAP FLPRFIETLE 300 YYLAMFESID EMMPRHRRER INVEQHCLAR DIVNVIACEG KERVERHELF GKWKSRLAMA 360 GFRPYPLSSY VNSVMRGLLK CYSKHYTLVE KDGAMLLRWK DRNLISASAW CCDG

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MCQPQTTFFT NCRQSTEAAR VEKRLTAIED LSLQRIPPGN LKQLLIACAK TLSENNIDKF  60
NMLIAKARVA VSIYGEPIQR LGAYMMEGLV ARKEASGSNI YRALHCQEPE GKDLLTYMHT  120
LYEIFPYLKF GYMAANGAIA EACRTEDRIH IIDFQIAQGT QWVTLLQALA ARPGGGPYVR  180
ITGIDDPVSK YARGGGLEAV ERRLMELSEQ FGIPVEFHGM PVFAADITRD MLDVKPGEAL  240
AVNFPLQLHH TPDESVDVNN PRDGILRMVR SLSPKVITLV EQESNTNTAP FLPRFIETLE  300
YYLAMFESID EMMPRHRRER INVEQHCLAR DIVNVIACEG KERVERHELF GKWKSRLAMA  360
GFRPYPLSSY VNSVMRGLLK CYSKHYTLVE KDGAMLLRWK DRNLISASAW CCDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-62	64	410	26	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.10329	0.0	boll\| leaf\| ovule\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443574.1	0.0	PREDICTED: scarecrow-like protein 21
Refseq	XP_012443575.1	0.0	PREDICTED: scarecrow-like protein 21
Refseq	XP_012443576.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A0D2SHN8	0.0	A0A0D2SHN8_GOSRA; Uncharacterized protein
STRING	Gorai.009G427800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14538	10	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-174	scarecrow-like 5

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]