PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G3474

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 342aa MW: 38337.2 Da PI: 8.9883

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G3474	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168	3e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g+ Gh_D05G3474 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT-DGR 109 79*************************9.89***********7777799*********************************99.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+apkg+kt+W+mheyrl Gh_D05G3474 110 KVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-66	9	163	IPR003441	NAC domain
PROSITE profile	PS51005	60.377	14	162	IPR003441	NAC domain
Pfam	PF02365	3.3E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MVVPETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTDGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLL ETSRKSGSSK LDDWVLCRIY KKNSSAQKSL PCVSSKEHSN 180 NGSTSSSSSQ LDDMLEPFPE LDNRYFALPR MNSLKTLQND DKTGFHNLGS GNLDWASLAG 240 LNSVPELVPS GQTQTQGIQS YVNNDLCIPT MPPTLTQMDM SMSKAGNSVE EEVQSGLRTQ 300 RINNSGFFQQ NSSGLMTQNF SNSIDPYGFR YPTQSGGFVF KQ

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MVVPETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLQIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTDGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLL ETSRKSGSSK LDDWVLCRIY KKNSSAQKSL PCVSSKEHSN  180
NGSTSSSSSQ LDDMLEPFPE LDNRYFALPR MNSLKTLQND DKTGFHNLGS GNLDWASLAG  240
LNSVPELVPS GQTQTQGIQS YVNNDLCIPT MPPTLTQMDM SMSKAGNSVE EEVQSGLRTQ  300
RINNSGFFQQ NSSGLMTQNF SNSIDPYGFR YPTQSGGFVF KQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-110	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-110	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-110	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-110	1	168	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-110	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-110	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269\|PubMed:25005917}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016685118.1	0.0	PREDICTED: NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	1e-154	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A1U8J8Z7	0.0	A0A1U8J8Z7_GOSHI; NAC domain-containing protein 72-like
STRING	Gorai.009G433200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1435	27	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-134	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]