PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3229
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8479.99 Da    PI: 8.8782
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3229genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.9e-095572825
                 HHHHHHHHHHHHHHHHHH CS
       SRF-TF  8 nrqvtfskRrngilKKAe 25
                 + +vtfskRrng+lKKA+
  Gh_D05G3229 55 QGKVTFSKRRNGLLKKAY 72
                 568**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.7204.3E-10464IPR016040NAD(P)-binding domain
SuperFamilySSF517354.12E-7461IPR016040NAD(P)-binding domain
SuperFamilySSF554551.16E-55673IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.0685773IPR002100Transcription factor, MADS-box
PfamPF003191.0E-65773IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MACVDVILDC IGAAYLQRNL VYLNVDGRLF IIGSITEFVA ELNIAAMFEK RFSIQGKVTF  60
SKRRNGLLKK AYDGCS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443307.12e-22PREDICTED: quinone oxidoreductase PIG3-like
TrEMBLA0A0D2TXM02e-47A0A0D2TXM0_GOSRA; Uncharacterized protein
STRINGGorai.009G358500.14e-48(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2504523