PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G3221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 33789 Da PI: 8.203 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154 | 6.9e-48 | 21 | 147 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 pGfrFhPtdeelv +yL++kv++k+l++ ik++d+yk++PwdLpk + +++e e yfF++r +ky+++ r+nr+t sg+Wkatg dk+++s+ +++ Gh_D05G3221 21 PGFRFHPTDEELVGFYLQRKVDNKPLKI-GLIKQIDMYKFDPWDLPKaSSREGEIESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSNgGSA 117 9***************************.89***************51444444599************************************95566 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkktLv y+g+a kg+ktdW+mhe+rl Gh_D05G3221 118 CIGLKKTLVCYRGTAGKGTKTDWMMHEFRL 147 6***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.852 | 19 | 182 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-52 | 20 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-23 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MNIVVQACAD NKDEEEDAPL PGFRFHPTDE ELVGFYLQRK VDNKPLKIGL IKQIDMYKFD 60 PWDLPKASSR EGEIESYFFC RRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSNGGSACIG 120 LKKTLVCYRG TAGKGTKTDW MMHEFRLPNS THTNASNATF SNPKSLALEE AEVWTICRIF 180 KRSVSHRKYT PDWREIASNR TSTATPSPQI ICSMGLGSNI HETYIAFGSP LVQSCDEKPG 240 FSGMNGRNQW HAEQLSIAQP SSMASSSSFS SCPENNDFFT RANWDELKSV VEFAFDPFSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-45 | 21 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-45 | 21 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-45 | 21 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-45 | 21 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-45 | 21 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-45 | 21 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-45 | 21 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-45 | 21 | 188 | 22 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847209 | 0.0 | KC847209.1 Gossypium hirsutum NAC domain protein NAC32 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313850.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_012441089.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 3e-83 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2P5QIT4 | 0.0 | A0A2P5QIT4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G357700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 2e-94 | NAC family protein |