PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3221
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 300aa    MW: 33789 Da    PI: 8.203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3221genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1546.9e-48211473128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                  pGfrFhPtdeelv +yL++kv++k+l++   ik++d+yk++PwdLpk + +++e e yfF++r +ky+++ r+nr+t sg+Wkatg dk+++s+ +++
  Gh_D05G3221  21 PGFRFHPTDEELVGFYLQRKVDNKPLKI-GLIKQIDMYKFDPWDLPKaSSREGEIESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSNgGSA 117
                  9***************************.89***************51444444599************************************95566 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   +glkktLv y+g+a kg+ktdW+mhe+rl
  Gh_D05G3221 118 CIGLKKTLVCYRGTAGKGTKTDWMMHEFRL 147
                  6***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.85219182IPR003441NAC domain
SuperFamilySSF1019411.7E-5220182IPR003441NAC domain
PfamPF023651.1E-2321147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNIVVQACAD NKDEEEDAPL PGFRFHPTDE ELVGFYLQRK VDNKPLKIGL IKQIDMYKFD  60
PWDLPKASSR EGEIESYFFC RRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSNGGSACIG  120
LKKTLVCYRG TAGKGTKTDW MMHEFRLPNS THTNASNATF SNPKSLALEE AEVWTICRIF  180
KRSVSHRKYT PDWREIASNR TSTATPSPQI ICSMGLGSNI HETYIAFGSP LVQSCDEKPG  240
FSGMNGRNQW HAEQLSIAQP SSMASSSSFS SCPENNDFFT RANWDELKSV VEFAFDPFSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-452118822174NAC domain-containing protein 19
3swm_B4e-452118822174NAC domain-containing protein 19
3swm_C4e-452118822174NAC domain-containing protein 19
3swm_D4e-452118822174NAC domain-containing protein 19
3swp_A4e-452118822174NAC domain-containing protein 19
3swp_B4e-452118822174NAC domain-containing protein 19
3swp_C4e-452118822174NAC domain-containing protein 19
3swp_D4e-452118822174NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472090.0KC847209.1 Gossypium hirsutum NAC domain protein NAC32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313850.10.0transcription factor JUNGBRUNNEN 1-like
RefseqXP_012441089.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2P5QIT40.0A0A2P5QIT4_GOSBA; Uncharacterized protein
STRINGGorai.009G357700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-94NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]