PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3213
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 600aa    MW: 65731.1 Da    PI: 7.2944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3213genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14347416455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +                   + +    +Ka++L +A+eY+ksLq
  Gh_D05G3213 347 VHNLSERRRRDRINEKMRALQELIPRCNkvchvifapfflllltylHVSVSQSDKASMLDEAIEYLKSLQ 416
                  6*************************888****************76666669****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.844343415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-13346420No hitNo description
SuperFamilySSF474593.4E-17346443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-12347416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-18347424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-15349421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MNHCVPDFEM EDDDSIPSTL TRSKKPSMPE DEIMELLWQN GQVVMQSQNQ RSIKKSPPFK  60
FQGADPSATK EIRSSSSHHH HQQQQQQQQQ QQQSLTDHHL FMQEDEMASW LHYPLSDASF  120
DHDFCADLLY PSSAAPCLTS TTATTSAPPP LGKVTQVSAS AVASASRPPI PPSRRNELES  180
TRIQNFVHFS RHKAVRVEQS KQSNSKSVVR ELTVVDSSDT PAMAPESGAS QAMPCNTEAA  240
SGENDNINCA NMSVAAGANT RSAGVSGSAC KDNLAAYEVT VTSSPGGSGA SAEPTAQKAA  300
AAEDRKRKGR ELEDTEYHSE DVEFESADTK KQTRGSTSTK RSRAAEVHNL SERRRRDRIN  360
EKMRALQELI PRCNKVCHVI FAPFFLLLLT YLHVSVSQSD KASMLDEAIE YLKSLQLQVQ  420
MMSMGCGMVP MMFPGVQQYM PTMGMGIGMG MGMDIGRPKM PFTNVLAGSP LPTPAAAAHL  480
GPRFPMPPFH MPPPALAPAP APDPSRIQPN NQSGTMLNRL GVQNPNQPCV PNFADPYQQY  540
NIGLHPMQLS PPQNQAMAQT SSSKPSTSKG ADNLENHPSG RSIVVYFTII RRWLLTKVYT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351356ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.166860.0leaf| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3942609e-85GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615087.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A0D2Q0N50.0A0A0D2Q0N5_GOSRA; Uncharacterized protein
STRINGGorai.001G183400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-61phytochrome interacting factor 3-like 5