PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G3039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 305aa MW: 34267.5 Da PI: 6.9356 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.3 | 2.6e-13 | 226 | 251 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++t C+yGd C+FaHg Gh_D05G3039 226 FKTELCNKWQETAACPYGDHCQFAHG 251 79***********************8 PP | |||||||
2 | zf-CCCH | 17.3 | 8.7e-06 | 264 | 288 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H Gh_D05G3039 264 YKTEVCRVILA-GdVCPYGHRCHFRH 288 9******5555.77**********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-18 | 220 | 258 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-10 | 222 | 257 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 225 | 252 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.793 | 225 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 226 | 251 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-11 | 259 | 292 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-8 | 259 | 294 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0026 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.976 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MQSDGSTLYG DVLSKQSKDK ENEGDYSPSA VAATSLFDLY HPRHVMQQHQ DMINRHNLCL 60 SRLHEASKEV EALRQENTAL RSVNRDLNKQ LSTLIQASMQ NHFATSDYNA TPYELLNEFQ 120 GLCLGGDGGG VGEEEVSDEC PTSMMEGAGD VERVMLPKSI SVRSNGYLKM MSSQNSQNAG 180 VSRRRKYRGP TRSGNASQLS GAKVYVQGGK KEEEPLELEV YNQGMFKTEL CNKWQETAAC 240 PYGDHCQFAH GIEELRPVIR HPRYKTEVCR VILAGDVCPY GHRCHFRHAL TEQEKFMGFL 300 KPPTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 5e-21 | 226 | 292 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX577460 | 2e-69 | JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440782.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 3e-89 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A2P5PXT5 | 0.0 | A0A2P5PXT5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G338500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7287 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 2e-85 | C3H family protein |