PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2988
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 996aa    MW: 111046 Da    PI: 5.7428
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2988genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.15.5e-56141284117
         CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                  e ++rwlk+ e++ iL+n+ek++l++e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr+yw
  Gh_D05G2988  14 EaQSRWLKPAEVLFILQNHEKYQLQQEPPRKPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEQNPSFQRRSYW 111
                  5599********************************************************************************************** PP

         CG-1 101 lLeeelekivlvhylev 117
                  +L+ ++e+ivlvhy+e 
  Gh_D05G2988 112 MLDPAYEHIVLVHYREI 128
                  **************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.5488134IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-7611129IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-4814127IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.84E-18422506IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.101.0E-8422503IPR013783Immunoglobulin-like fold
CDDcd001028.96E-7422506No hitNo description
PfamPF018336.9E-10422505IPR002909IPT domain
Gene3DG3DSA:1.25.40.208.2E-17625723IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.467629721IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-16632723IPR020683Ankyrin repeat-containing domain
CDDcd002044.05E-15634721No hitNo description
PfamPF127964.5E-7635722IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.553662694IPR002110Ankyrin repeat
SMARTSM002480.0029662694IPR002110Ankyrin repeat
SMARTSM0001526779801IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.565780809IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.5E-8814889IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.9837859IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078838867IPR000048IQ motif, EF-hand binding site
PfamPF006120.025840858IPR000048IQ motif, EF-hand binding site
SMARTSM000151.9E-4860882IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.011861885IPR000048IQ motif, EF-hand binding site
PfamPF006123.8E-5863882IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MAQSGYDINN LFREAQSRWL KPAEVLFILQ NHEKYQLQQE PPRKPTSGSL FLFNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGE QNPSFQRRSY WMLDPAYEHI  120
VLVHYREINE AKPSSASTVH SSLSNSARTP SPISYTSQNP GFNSLSSDVH ESYQNLPSPG  180
SAEVSSDIVI KNNGIDNTVE YPSPDDLQVV QALKRLEEQL SLNEDSVKEM SQFYGMDGDT  240
NDSEFQEYGR EITKQEQQAD LLYEPDNIFQ DHLYSQPARV ENYSNSSMLL PDGGKNGGHS  300
QVYGNDNSDG IHESQYWKSV FDSCNTQSAV NSKGKPLSSL RMRATEQQEQ SHLLNFNGSS  360
IEASPVLLHQ EVGNVDIPAY SSAIESFDTK SDNYRMFFNQ EEIGIPLATD SSLTIAQKQK  420
FTIREISPEW GYSSEPTRVI IVGSFLCDPS ESVWACMFGE TEVPIEIIQE GVICCKAPPH  480
LPGKVTLCIT SANRESCSEI REFEYRVSSS SSSSSSSSSS SCIRYNLSHA EAPKSLEELL  540
LLVRFVKMLL TDSSSQKDSI DSGENFSEKL KADDESWSHV IEALLIGSGT SSGTIDWLLQ  600
ELLKDKLQQW LSSRSKESGD QPGITMSKKE QGIIHMAAGL GFEWALNPIL NHGVSINFRD  660
INGWTALHWA ARFGREKMVA ALIASGASAW AVTDPTSQDP SGETPASIAD SSGHKGLAGY  720
LSEVALMSHL SSLTLEESEL SKGSAAVQAE IAVNSVSQGS LATNEDQLSL KDTLAAVRNA  780
AQAAARIQNA FRAHSFRKRQ QKEDANIAAS VDEYGISLGE IQNLSTMSKL AFGNARDYNS  840
AALSIQKKFR GWKGRKDFLA LRQKVVKIQA HVRGYQVRKN YKVICWAVGV LDKVVLRWRR  900
KGVGLRGFRS ESDCIDDEEE DILKVFRKQK VDVAIDEAVS RVLSMVDSPD ARQQYRRMLE  960
KYRQAKAKLV NTNEPTTSTS ITDGYDMESD DLSYFP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.37070.0embryo| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016685684.10.0PREDICTED: calmodulin-binding transcription activator 4 isoform X3
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1U8JBS50.0A0A1U8JBS5_GOSHI; calmodulin-binding transcription activator 4 isoform X3
STRINGGorai.009G332200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]