PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 636aa MW: 67999.7 Da PI: 5.2509 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 276 | 317 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T eE e+++d + +G++ +++Ia+ + ++t +c+++++k l Gh_D05G2837 276 TSEEKEIFIDKLAAFGKD-FRKIASFLD-HKTTADCVEFYYKNL 317 89**************99.*********.************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.54E-11 | 259 | 319 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.579 | 270 | 321 | IPR017884 | SANT domain |
SMART | SM00717 | 2.1E-5 | 271 | 319 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 276 | 318 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MKEKPPAAWS RPTPVPVADS GGRGVRVEAW AGGVADEEAT KFGLLHRLIR TGPLENSPVG 60 APLTSVVLLG GWHLFAKENG GHGFLPSHSG DKILGDESCH QSVSCSDSGD AAACVIPAAP 120 SGETTPRKKP CLGWGQGLAK YEKKKVECPD KSMNRVEATT SAGSTESSNS MSSNLADKSP 180 RVLGFSDCSS SATPSSVDCG SSPAQYLILE PSTVMINIAS KLLLDSNGRL YRIALKMPGL 240 VLDEKEEQVS RFISSNGLVE DPCAAEKERA LINPSTSEEK EIFIDKLAAF GKDFRKIASF 300 LDHKTTADCV EFYYKNLKSE CFERKKKLDL SKQGKSFMNT YLLTSRKKWS RDFNAASLDV 360 LGAASVITAH AENAMQNQKT SSGRIFIESH CNSRTSQFDD SIAKRSSSSE IIWKDEVAVA 420 ADVLAGICGS LSSKAMSSCI IGSADPGEAL PLDTGDACVL ESSVVCSKKL VSKMEDLPSS 480 IVSMDFDESD INREVSLQTD LNLSDEKNGR LIDHRDSEAV EAMVSDVGQT EPISEGVGDV 540 IVVDGSRAES VYVHRTAALA NLNAVRNHVA EQGPGVSIAV SGALGEAVDP CVSRLDTVLE 600 PKSDAGSGND WRQGKLHCPK MVWMNIIQNV VQTLAF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022745646.1 | 1e-113 | uncharacterized protein LOC111295980 isoform X2 | ||||
Refseq | XP_022745648.1 | 1e-113 | uncharacterized protein LOC111295980 isoform X3 | ||||
Refseq | XP_022745649.1 | 1e-114 | uncharacterized protein LOC111295980 isoform X4 | ||||
TrEMBL | A0A2P5X6E5 | 0.0 | A0A2P5X6E5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G314600.1 | 1e-165 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5260 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 4e-55 | MYB family protein |