PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2748

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 420aa MW: 48492.3 Da PI: 6.5349

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2748	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.8	3.4e-29	104	189	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m+e+ g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Gh_D05G2748 104 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMAEGyGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFKQLEA 189 8***********************************76559***********************97..66678*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.841	97	162	IPR017877	Myb-like domain
Pfam	PF13837	1.7E-20	103	190	No hit	No description
CDD	cd12203	1.41E-19	103	169	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MEMGDQYGLP DFQRLLTRRT HFPASLLPQP SESPYLAHHR NMAPSPPPYH EPPYVLSNGD 60 IAMPSGLLRF NTTGATGFTA EASASAAVGG GGWSLGNIDC GNSRWPRQET LTLLEIRSRL 120 DSKFKEANQK GPLWDEVSRI MAEGYGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKN 180 YRFFKQLEAI YGETSNQSSV PETNNINTVP SNLPEKYHES MQEQKMSESL GFSDPEFEAS 240 SSEKMNDDEC ELSGIASMVN QMGVKKGWKT KVKDFVDAQM KRLIDSQDVW MERMLKVIEE 300 KEKERVLREE EWRRQEAARF DKEHELWVKE RAWIEARDAS LMAALRTLRP LTAKTQNEIN 360 ANRWTEHEIL ERRLQENGYS TRQSTWEDIE AKMVNLGYGY EHEANNAECY KKRKEDYLSS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MEMGDQYGLP DFQRLLTRRT HFPASLLPQP SESPYLAHHR NMAPSPPPYH EPPYVLSNGD  60
IAMPSGLLRF NTTGATGFTA EASASAAVGG GGWSLGNIDC GNSRWPRQET LTLLEIRSRL  120
DSKFKEANQK GPLWDEVSRI MAEGYGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKN  180
YRFFKQLEAI YGETSNQSSV PETNNINTVP SNLPEKYHES MQEQKMSESL GFSDPEFEAS  240
SSEKMNDDEC ELSGIASMVN QMGVKKGWKT KVKDFVDAQM KRLIDSQDVW MERMLKVIEE  300
KEKERVLREE EWRRQEAARF DKEHELWVKE RAWIEARDAS LMAALRTLRP LTAKTQNEIN  360
ANRWTEHEIL ERRLQENGYS TRQSTWEDIE AKMVNLGYGY EHEANNAECY KKRKEDYLSS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21329	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ395075	1e-117	GQ395075.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2098 SSR marker DPL0591 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016685971.1	0.0	PREDICTED: trihelix transcription factor PTL-like
TrEMBL	A0A1U8J6K5	0.0	A0A1U8J6K5_GOSHI; trihelix transcription factor PTL-like
STRING	Gorai.009G304600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	6e-78	Trihelix family protein