PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2713
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 556aa    MW: 60534.7 Da    PI: 4.8094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2713genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
      Gh_D05G2713 40 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87
                     79******************************************9986 PP
2Myb_DNA-binding56.18.7e-1893136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE++l++++++++G++ W++ a++m+ gRt++++k++w++
      Gh_D05G2713  93 KGAFTQEEEQLIIELHAKMGNK-WARMAAHMP-GRTDNEIKNYWNT 136
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0373587IPR017930Myb domain
SMARTSM007172.4E-153989IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-3039134IPR009057Homeodomain-like
PfamPF002492.4E-154087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-244194IPR009057Homeodomain-like
CDDcd001676.41E-124287No hitNo description
PROSITE profilePS5129426.95888142IPR017930Myb domain
SMARTSM007171.3E-1792140IPR001005SANT/Myb domain
PfamPF002491.6E-1693136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2695141IPR009057Homeodomain-like
CDDcd001676.29E-1395136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MSHTKHERED GMLSKDQTES PLIDDGSCGG GGAGGVVLKK GPWTSAEDAI LIDYVKKHGE  60
GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIIELHAK MGNKWARMAA  120
HMPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCLQALQE SHSTSVVNAL DKGPNDILQN  180
NSYEIPDVIF DSLKANQNVL PYVPELPVLS ASSMLMKGLG SSQYCGFMQP TIHRQKRLRE  240
SPAFFPSYTG AVKNECPLFM QFQEDISDKA AGSFGLSFPI EADPAAKNSQ PFGVFPGSHT  300
LSNGNFSASE PPLEAVKLEL PSLQYPETEL GNWGTLTCPP PLLESVDAFI QSPPPTSGLE  360
SDSLSPRNSG LLDALLHEAK TLSSAKNHAS DKSSNSSTPG DIAEGSNFNI CETEWEKCGE  420
PLSPMGNSAT SIFSECISAS GSSLDEQPPA ETVTESHVKS EPADRVLTPE IQKEAPIRLD  480
SSRPDTLLAS NWLEQGSGYD KDQAILTDAI SSLLGDDLRS EYKNVEEGTS ISSQAWGLDS  540
CAWNNMPAVC QMSELP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31381415107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591467e-64AJ459146.1 Gossypium hirsutum partial myb118 gene, clone pGhMYB118.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686750.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_016686751.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_016686752.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_016686753.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_016686754.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A1U8JDH60.0A0A1U8JDH6_GOSHI; transcription factor GAMYB-like
STRINGGorai.009G301100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38022859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-143myb domain protein 33