PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2616

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 454aa MW: 51756.2 Da PI: 7.4973

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2616	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	313.3	5.5e-96	71	452	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lLl A+ v++++ + a L++l + +s gd++qR++ayf+ +L arl+ s y+ + ++t+ +ee+ a++ ++ vsP+++f+h+ta Gh_D05G2616 71 LIHLLLITATSVDENNVNSALDNLTQLYQSVSLMGDSVQRVVAYFADGLVARLLTRKSPFYDMIMKEPTA----EEEFLAFTCLYRVSPYYQFAHFTA 164 689**************************************************999999888886....78889999************* PP GRAS 99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188 NqaI ea e+e +++H+iDfd+ +G+QWp+L+q+L++++ ++ slR+Tg+g+ s el+et++rL +fA+ + ++ fef+ l l Gh_D05G2616 165 NQAIIEAYEKEeefnnRALHVIDFDVAYGFQWPSLIQSLSEKAsgGNRISLRLTGFGA----SFAELQETENRLVSFAKGFrNLVFEFQGL----LRG 254 *****9977777788*******************9634455*****....9************9758***8....777 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +l +Lr k++E++aVnlv++l +l +s+++++ +Lk v+s +P +vv+veqe ++ sFl rf+e+l+y++a+fdsl+ lp es er ++E Gh_D05G2616 255 SKLTNLRKKKNETVAVNLVFHLNTLN-NSMKISD----TLKSVRSHRPSIVVLVEQEGGRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESAERLSIE 347 7889**************9996.6666666....******************************************************** PP GRAS 287 rellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvk...sdgyrveee..sgslvlgWkdrpL 367 + lg+ei++++ c ++e + r e++e+W++r+e+ GF+ +ls+k qaklll+ +++ + g+rv e+ ++l lgW+dr L Gh_D05G2616 348 KNHLGKEIKSMINCDKDEennkSSSRYEKMETWKNRMESHGFEGTKLSSKCLIQAKLLLKitthycplQCEgevNGGFRVFERdeAKALSLGWQDRCL 445 **********887633336789****************************98333222221221222347777653355667**** PP GRAS 368 vsvSaWr 374 +++SaW+ Gh_D05G2616 446 LTASAWQ 452 ****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.996	45	419	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-93	71	452	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MEDEPLNLSL AIMADPSGEK INRKRKRRVP LPSSYEGCEG KIFKLLQVRE EMLKLDYKRK 60 GVVEDGKALH LIHLLLITAT SVDENNVNSA LDNLTQLYQS VSLMGDSVQR VVAYFADGLV 120 ARLLTRKSPF YDMIMKEPTA EEEFLAFTCL YRVSPYYQFA HFTANQAIIE AYEKEEEFNN 180 RALHVIDFDV AYGFQWPSLI QSLSEKASGG NRISLRLTGF GASFAELQET ENRLVSFAKG 240 FRNLVFEFQG LLRGSKLTNL RKKKNETVAV NLVFHLNTLN NSMKISDTLK SVRSHRPSIV 300 VLVEQEGGRS PRSFLSRFME SLHYFAAMFD SLDDCLPLES AERLSIEKNH LGKEIKSMIN 360 CDKDEENNKS SSRYEKMETW KNRMESHGFE GTKLSSKCLI QAKLLLKITT HYCPLQCEGE 420 VNGGFRVFER DEAKALSLGW QDRCLLTASA WQCV

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MEDEPLNLSL AIMADPSGEK INRKRKRRVP LPSSYEGCEG KIFKLLQVRE EMLKLDYKRK  60
GVVEDGKALH LIHLLLITAT SVDENNVNSA LDNLTQLYQS VSLMGDSVQR VVAYFADGLV  120
ARLLTRKSPF YDMIMKEPTA EEEFLAFTCL YRVSPYYQFA HFTANQAIIE AYEKEEEFNN  180
RALHVIDFDV AYGFQWPSLI QSLSEKASGG NRISLRLTGF GASFAELQET ENRLVSFAKG  240
FRNLVFEFQG LLRGSKLTNL RKKKNETVAV NLVFHLNTLN NSMKISDTLK SVRSHRPSIV  300
VLVEQEGGRS PRSFLSRFME SLHYFAAMFD SLDDCLPLES AERLSIEKNH LGKEIKSMIN  360
CDKDEENNKS SSRYEKMETW KNRMESHGFE GTKLSSKCLI QAKLLLKITT HYCPLQCEGE  420
VNGGFRVFER DEAKALSLGW QDRCLLTASA WQCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-55	79	451	27	378	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	27	RKRKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442637.1	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A0D2SA13	0.0	A0A0D2SA13_GOSRA; Uncharacterized protein
STRING	Gorai.009G289600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15761	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	5e-59	SCARECROW-like 21