PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2532

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 356aa MW: 38784 Da PI: 4.5287

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2532	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	7.9e-05	305	344	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r R+d+i++ + L++l+P +K + + +L +A++Y+ksL Gh_D05G2532 305 RMRMDKIRETVSVLQSLIPGV----EGK-DAIVVLDEAIDYLKSL 344 99****************6....244.5599********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.804	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0015	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.26E-7	304	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.75E-6	305	349	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-7	305	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MGEGCGSWFP LAWQSHNMNP LAAPPPLGQQ NANPLFINSG TKMVSTRGTL PVYGYHDLPH 60 LRIGQVNEPQ GWFHCSPRFQ QVFAPSSNTF LKEQLPANPY ENLTENIVPK AGSGCPQKRF 120 LVFDQSGGQT TLIFSSAFGT PIKCSSLGPN LPFGCNLNKE DPMATVNPNL HPGPISKDVF 180 DDNETDVQSE MHEDTEELNA LLYSDDDSDY TEDEEVTSTG HSPSTMTAHC EQFEGGAEGV 240 ASSSGLTKKR KLLDGSNDDT PLLMDNTSSL NHCRCSEQED DADSSFANGQ NLRSDGMHLS 300 SGNKRMRMDK IRETVSVLQS LIPGVEGKDA IVVLDEAIDY LKSLKRKAET LGLSSP

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MGEGCGSWFP LAWQSHNMNP LAAPPPLGQQ NANPLFINSG TKMVSTRGTL PVYGYHDLPH  60
LRIGQVNEPQ GWFHCSPRFQ QVFAPSSNTF LKEQLPANPY ENLTENIVPK AGSGCPQKRF  120
LVFDQSGGQT TLIFSSAFGT PIKCSSLGPN LPFGCNLNKE DPMATVNPNL HPGPISKDVF  180
DDNETDVQSE MHEDTEELNA LLYSDDDSDY TEDEEVTSTG HSPSTMTAHC EQFEGGAEGV  240
ASSSGLTKKR KLLDGSNDDT PLLMDNTSSL NHCRCSEQED DADSSFANGQ NLRSDGMHLS  300
SGNKRMRMDK IRETVSVLQS LIPGVEGKDA IVVLDEAIDY LKSLKRKAET LGLSSP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25149	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681864.1	0.0	PREDICTED: transcription factor bHLH145-like
TrEMBL	A0A1U8J0X5	0.0	A0A1U8J0X5_GOSHI; transcription factor bHLH145-like
STRING	Gorai.009G279600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10530	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-07	phytochrome interacting factor 3