PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2531

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 478aa MW: 54766.3 Da PI: 4.7985

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2531	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.3	0.00015	277	310	8	42
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKae 42 +E +R +++N+afe Lr+ ++ +++++K Ka+ Gh_D05G2531 277 VESKRIKKVNDAFEALRKKFNSP-QTDQQKQKKAS 310 799***************99996.56777777764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51774	44.542	11	91	IPR011684	Protein Networked (NET), actin-binding (NAB) domain
Pfam	PF07765	6.7E-35	12	85	IPR011684	Protein Networked (NET), actin-binding (NAB) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003779	Molecular Function	actin binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MMLQKVASNA YSWWWASHIR TKQSKWLEQN LHDVEEKVSN MLEIIDDDGD SFAQRANMYY 60 RKRPELLAIV EDTYRAYRAL AERFDYLSRD LQSANRTIAT VFPDQVPYSL HDEDDENSCL 120 VSTSSSLNKS KSLKPGSRVP SPKTDFRSQS MLLLRKGQLK KAFSSAQAAS SLNSGLSKEE 180 ALEEINKLQK EILEMQTERE LVKNSYEQGY KKLCEIENDI TEKQKRIYSL QDEYDIRSAI 240 DDNEARILMA NRVLKTCQES LVKLQETHEQ STEEGRVESK RIKKVNDAFE ALRKKFNSPQ 300 TDQQKQKKAS SARDVDNMVY EFNSAEKGRE YMELLQKEIE EKLELDSSSS LTMSQLADKI 360 DDLVQRVVNM ETAVFSENAS VKRLKSDADE LQEHVKSLEE DEEVLAEGSD SMEQRISVLE 420 GELSGVKELL KTIIEQNNSL KAHFTAASCD INHLSVNLHA VKMDEEVENA ELSKEGKP

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MMLQKVASNA YSWWWASHIR TKQSKWLEQN LHDVEEKVSN MLEIIDDDGD SFAQRANMYY  60
RKRPELLAIV EDTYRAYRAL AERFDYLSRD LQSANRTIAT VFPDQVPYSL HDEDDENSCL  120
VSTSSSLNKS KSLKPGSRVP SPKTDFRSQS MLLLRKGQLK KAFSSAQAAS SLNSGLSKEE  180
ALEEINKLQK EILEMQTERE LVKNSYEQGY KKLCEIENDI TEKQKRIYSL QDEYDIRSAI  240
DDNEARILMA NRVLKTCQES LVKLQETHEQ STEEGRVESK RIKKVNDAFE ALRKKFNSPQ  300
TDQQKQKKAS SARDVDNMVY EFNSAEKGRE YMELLQKEIE EKLELDSSSS LTMSQLADKI  360
DDLVQRVVNM ETAVFSENAS VKRLKSDADE LQEHVKSLEE DEEVLAEGSD SMEQRISVLE  420
GELSGVKELL KTIIEQNNSL KAHFTAASCD INHLSVNLHA VKMDEEVENA ELSKEGKP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed specifically in pollen. {ECO:0000269\|PubMed:22840520}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plant-specific actin binding protein. Associates with F-actin at the plasma membrane in growing pollen tubes. May be part of a membrane-cytoskeletal adapter complex. {ECO:0000269\|PubMed:22840520}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681802.1	0.0	PREDICTED: protein NETWORKED 2A-like
Swissprot	P0DMS1	1e-140	NET2A_ARATH; Protein NETWORKED 2A
TrEMBL	A0A1U8IUL2	0.0	A0A1U8IUL2_GOSHI; protein NETWORKED 2A-like
STRING	Gorai.009G279300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4169	3	4

Publications ? help Back to Top
Deeks MJ, et al. A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Curr. Biol., 2012. 22(17): p. 1595-600 [PMID:22840520] Hawkins TJ,Deeks MJ,Wang P,Hussey PJ The evolution of the actin binding NET superfamily. Front Plant Sci, 2014. 5: p. 254 [PMID:24926301]