PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2521
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 125aa    MW: 13946.1 Da    PI: 10.1485
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2521genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK64.71.5e-204286448
       RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
                 ++s++d++ +Fslp+ dAA++Lgvc++vLK+iCR++G++RW hRk
  Gh_D05G2521 42 NLSFDDIADFFSLPLVDAASTLGVCTSVLKKICRENGLNRWSHRK 86
                 79******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.3930110IPR003035RWP-RK domain
PfamPF020421.2E-174286IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MGRRRASNHI PGARIRDSLP IRYHLFHFLP SSTLTFRKPL LNLSFDDIAD FFSLPLVDAA  60
STLGVCTSVL KKICRENGLN RWSHRKPDAG LAAAILMQNL SRISMAATAY SKGELEYAAY  120
LSDHV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.112768e-61boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459805.13e-45PREDICTED: uncharacterized protein LOC105780177 isoform X1
RefseqXP_012459806.13e-45PREDICTED: uncharacterized protein LOC105780177 isoform X1
TrEMBLA0A0D2V0L26e-44A0A0D2V0L2_GOSRA; Uncharacterized protein
STRINGGorai.012G016100.11e-44(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1165168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.22e-10Nin-like family protein