PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2470

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 92aa MW: 10457.7 Da PI: 6.8027

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2470	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.1	3.6e-12	6	52	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ +l+ +a + + ++ +W++ ar +g g+t +++k+++q++ Gh_D05G2470 6 NWTPKQNKLFENALAIYDKDtpdRWHKLARAVG-GKTVEEVKLHYQNL 52 8******************************.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.015	2	57	IPR017884	SANT domain
SMART	SM00717	8.2E-10	3	55	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.68E-14	5	61	IPR009057	Homeodomain-like
CDD	cd00167	4.74E-9	6	53	No hit	No description
Pfam	PF00249	7.6E-9	6	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-5	6	56	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MASGSNWTPK QNKLFENALA IYDKDTPDRW HKLARAVGGK TVEEVKLHYQ NLVDDIKQIE 60 SGHVPLPPYK KAGGNQGYNN FMDDEEPRFN SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-30	3	89	7	87	RADIALIS
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9055	1e-138	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the funiculus of ovules and in embryos. In young ovules, expression is observed in the adaxial side of the funiculus (the stalk connecting the embryo sac to the placenta). Also expressed in heart-stage embryos, in the cortex and endodermis of the hypocotyl region but not in the cotyledons, shoot and root apical meristems, provasculature or epidermis. Not detected in young seedlings, mature roots or in young floral primordia. {ECO:0000269\|PubMed:17672842}.
Uniprot	TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269\|PubMed:17672842}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. Required for female gametophyte development. {ECO:0000269\|PubMed:15634699}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440477.1	3e-61	PREDICTED: protein RADIALIS-like 3
Refseq	XP_016684660.1	3e-61	PREDICTED: protein RADIALIS-like 3
Swissprot	Q1A173	4e-30	RADL6_ARATH; Protein RADIALIS-like 6
Swissprot	Q9SIJ5	4e-30	RADL2_ARATH; Protein RADIALIS-like 2
TrEMBL	A0A0D2TSD6	6e-60	A0A0D2TSD6_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8J2U3	6e-60	A0A1U8J2U3_GOSHI; protein RADIALIS-like 3
STRING	Gorai.009G273300.1	1e-60	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM221	28	198

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	1e-32	RAD-like 6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang B, et al. RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity. PLoS Genet., 2018. 14(12): p. e1007839 [PMID:30566447]