PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2406 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19693.4 Da PI: 4.929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 10 | 60 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr++k +g+Wv+eIr+p gk++r++lg++ tae+Aa+a++ a++ ++g Gh_D05G2406 10 SSYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDVAALHFRG 60 67*******9.**********8...557***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.32E-23 | 10 | 69 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.9E-13 | 10 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.08E-23 | 10 | 70 | No hit | No description |
SMART | SM00380 | 9.7E-39 | 11 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 11 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-33 | 11 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEHEAGVSPS SYRGVRQRKW GKWVSEIREP GKKTRIWLGS YETAEMAAAA YDVAALHFRG 60 RAARLNFPEL VDSLPRPASS RAEDVQMAAQ EAALRLSRRA KISSEVGGEL AGAGKSLGPV 120 RVGLSQSQIQ AINEFPLDSP KMWMELAGAV LLAEPMMCGV DDAEFMSDYE EILVEPIWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 12 | 73 | 6 | 68 | ATERF1 |
3gcc_A | 3e-18 | 12 | 73 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016700537.1 | 1e-128 | PREDICTED: ethylene-responsive transcription factor ERF022-like | ||||
Swissprot | Q9C9I2 | 6e-49 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A1U8KDF9 | 1e-126 | A0A1U8KDF9_GOSHI; ethylene-responsive transcription factor ERF022-like | ||||
TrEMBL | A0A2P5QGQ6 | 1e-126 | A0A2P5QGQ6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G266700.1 | 1e-126 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 7e-48 | ERF family protein |