PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2404
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 178aa    MW: 19765.2 Da    PI: 4.6304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2404genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-191565155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g
  Gh_D05G2404 15 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 65
                 67*****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.75E-241574No hitNo description
SuperFamilySSF541714.38E-231574IPR016177DNA-binding domain
PfamPF008471.9E-121565IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-321674IPR001471AP2/ERF domain
PROSITE profilePS5103224.1051673IPR001471AP2/ERF domain
SMARTSM003809.5E-391679IPR001471AP2/ERF domain
PRINTSPR003673.5E-101728IPR001471AP2/ERF domain
PRINTSPR003673.5E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEGKSSGDTR AGLSSSYRGV RKRKWGKWVS EIREPGKKTR IWLGSFETPE MAAAAYDVAA  60
LHFRGRDARL NFPEMVNCLP RPASSNADDI RMAAQEAALI VRSNATPPDV GSSSAGVGPV  120
TVRLTQSQIQ AINESPLDSP KMWMQMSEAL MMDDMMLPNE NEENDQWDDM QSDSLWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171477367ATERF1
3gcc_A1e-171477367ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016700722.11e-129PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I27e-63ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1U8KDZ21e-128A0A1U8KDZ2_GOSHI; ethylene-responsive transcription factor ERF021-like
STRINGGorai.009G266600.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-65ERF family protein