PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2400
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 147aa    MW: 16159.2 Da    PI: 8.2128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2400genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-151261255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr+++ +g+Wv eIr+p     +  r +lg++ t+e Aa a++ a  +l+ 
  Gh_D05G2400 12 KYKGVRRRR-WGKWVTEIRVPG----TeGRLWLGSYSTPEAAAVAHDIAFYCLRR 61
                 8*****777.**********83....359********************999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-241172IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-161271IPR016177DNA-binding domain
CDDcd000184.10E-241271No hitNo description
SMARTSM003804.1E-251277IPR001471AP2/ERF domain
PfamPF008473.2E-81260IPR001471AP2/ERF domain
PROSITE profilePS5103221.181271IPR001471AP2/ERF domain
PRINTSPR003672.5E-81324IPR001471AP2/ERF domain
PRINTSPR003672.5E-83551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSADGSRADQ RKYKGVRRRR WGKWVTEIRV PGTEGRLWLG SYSTPEAAAV AHDIAFYCLR  60
RPSSLTALNF PSMLPPHVNS NMSPKSVQKA ASDAGMAVDA QMIMMDSPMN NEIKANTNDG  120
SSCGGGSWER SEGRETETLS ISIEDYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.136420.0ovule
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5792532e-64JX579253.1 Gossypium hirsutum clone NBRI_GE11456 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698234.11e-107PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I84e-49ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1U8KC621e-105A0A1U8KC62_GOSHI; ethylene-responsive transcription factor ERF020-like
TrEMBLA0A2P5QGQ01e-105A0A2P5QGQ0_GOSBA; Uncharacterized protein
STRINGGorai.009G266200.11e-102(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]