PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 171aa MW: 19881.4 Da PI: 7.8594 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.8 | 6.3e-07 | 91 | 153 | 25 | 88 |
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ei++ ++ k+gk++ +++ + r+ +r gCk k +v++e+ d+++++t+ e +HnHe Gh_D05G2344 91 CLEIMDDGYRWRKYGKKKIKNNP--NPRHYYRCSREGCKVKKRVEREReDEQFVITTYEGKHNHE 153 55677888888899999998777..88999999*************999***************7 PP | |||||||
2 | WRKY | 98.6 | 4e-31 | 95 | 153 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K++k++++pr+YYrC+ +gC+vkk+ver++ed+++v++tYeg+Hnhe Gh_D05G2344 95 MDDGYRWRKYGKKKIKNNPNPRHYYRCSREGCKVKKRVEREREDEQFVITTYEGKHNHE 153 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-33 | 83 | 155 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-27 | 89 | 155 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.353 | 90 | 155 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-34 | 95 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-25 | 96 | 153 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MELNRDDHLD VEDFLVLPHL ETHKEPAATC SSLKAKPSVT LSPVNGSCRD LPSNTLCVDY 60 MLQQNYEGYV VERMEGEDAG KFKVAFRTRS CLEIMDDGYR WRKYGKKKIK NNPNPRHYYR 120 CSREGCKVKK RVEREREDEQ FVITTYEGKH NHENPAAATS LPPHQNPLPY H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-26 | 85 | 156 | 7 | 78 | Probable WRKY transcription factor 4 |
2ayd_A | 8e-26 | 83 | 157 | 2 | 76 | WRKY transcription factor 1 |
2lex_A | 9e-26 | 85 | 156 | 7 | 78 | Probable WRKY transcription factor 4 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669816 | 0.0 | KF669816.1 Gossypium hirsutum WRKY transcription factor 77 (WRKY77) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442775.1 | 1e-126 | PREDICTED: probable WRKY transcription factor 56 | ||||
TrEMBL | A0A2P5RL07 | 1e-126 | A0A2P5RL07_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G259600.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22097 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 5e-28 | WRKY DNA-binding protein 51 |