PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G2306 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 596aa MW: 65914.4 Da PI: 7.3596 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.8 | 2.6e-27 | 88 | 170 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+ + +++ + +t+++ +ql Gh_D05G2306 88 RWPRQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVFKYHKRTKDVRTGKS--DGKTYRFSNQL 170 8********************************************************************975..44568888776 PP | |||||||
2 | trihelix | 101.9 | 5e-32 | 421 | 506 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLie+r++++ ++ ++ k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+k++ kkr +e+s+tcpyf+ql+a Gh_D05G2306 421 RWPKVEVQALIELRTRLDAKYHDNGPKGPLWEEISAAMKKLGYNRNAKRCKEKWENINKYFKKVKDNHKKR-PEDSKTCPYFHQLDA 506 8********************************************************************98.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.5E-4 | 85 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.16E-25 | 87 | 152 | No hit | No description |
Pfam | PF13837 | 2.5E-17 | 87 | 168 | No hit | No description |
PROSITE profile | PS50090 | 6.957 | 87 | 145 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.7E-4 | 418 | 480 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.5E-22 | 420 | 507 | No hit | No description |
PROSITE profile | PS50090 | 7.248 | 420 | 478 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.15E-26 | 420 | 485 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 420 | 477 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MLGGGGDTTA SVLGSGGGGT DGNVTTTAGG GGAVSMGRSG GARDGGSSEG GGVAANNMFG 60 SNGNNNNNSG DEDRVRVDEG DRCFGGNRWP RQETLALLKI RSDMDVTFRD ASVKGPLWEE 120 VSRKLAELGY HRSAKKCKEK FENVFKYHKR TKDVRTGKSD GKTYRFSNQL LALETHPSFQ 180 SPPATAAVAA PTSPQQAQPQ ATMPAPSLPN VTVPSAAALP SLPQNIVPTN INPTPTLPSF 240 PNVSADQMSN STSSSTSSDL ELEGRRKKKR KWKGFFERLM REVVHEQEEM QKKFLEALEK 300 REQERMAREE AWRMQEMARI NRERELLAQE RSVAAAKDAA LMSLLQKLSE QKNPGQPQSN 360 PLQQPQPPVS VVAAAATPAA ALSVPAPQPP PPLVPQQPML NLEVASKSDN GDHSCTPSSS 420 RWPKVEVQAL IELRTRLDAK YHDNGPKGPL WEEISAAMKK LGYNRNAKRC KEKWENINKY 480 FKKVKDNHKK RPEDSKTCPY FHQLDALYRE KNKHDSSSTQ FKPQNSVPLM VRPEQQWPPL 540 PPSDPDHQHR RDPEDLESYQ NHQDEDGNDE YEDEDEDERG EYEIVASKPV SMGTCE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 269 | RRKKKR |
2 | 264 | 270 | RRKKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20178 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX963782 | 0.0 | JX963782.1 Gossypium hirsutum clone NBRI_TRANS-1010 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012446163.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-140 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2P5R3K0 | 0.0 | A0A2P5R3K0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G253700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4849 | 25 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-154 | Trihelix family protein |