PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G2263

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 2196aa MW: 240565 Da PI: 8.8892

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G2263	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	2051	2072	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C+ G++Ck +H++ Gh_D05G2263 2051 CPNFEATGSCPLGSTCKLHHPK 2072 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.159	1918	1946	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.015	1919	1945	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.8	1947	1970	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.869	1950	1971	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.568	1972	2022	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	25	1972	2021	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.69	2023	2044	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1	2023	2049	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.005	2045	2073	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.41	2050	2072	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-4	2051	2072	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2196 aa Download sequence Send to blast
MDPPSYIHHH HHHANHPRYV PFSPTPPLHP HCPPPQPLPP YQQSPTNLHP SRHHLPPQIR 60 PPPPPPLPQQ NQQQTYQPLP APPPPLPRQQ YSNHPPYNPH HPQYSSSSNF NSNPKPTHVS 120 HLFHDVPQRR LPEFDTRPDY WPENRVPRPH PVSNLDREAL YHQFDRRPAS PVIDRFMHDL 180 EGTSRFRDLE LNQREREGRV HNDRWISDRS SRDFGIVSIG FESNSNNSRF DHEATENIRW 240 GSRLREPLIE SGNDEINERD EMRVFSRKND YCDPEAERFS DKGSGREGNH EFNRTPWKQI 300 QKKSALLRIQ KVKLSHRSRE DERPHYLGYH NEGKTGTFRG KDSVLQSDHG MDEKKREGTP 360 VELDVSFKSN SLVAKAIVTS SPASNFDSNL MPRNTKIRKL TAFDMVSSSA QPNKGSESTA 420 KLGGSTSAVK SGSGPVDSKQ SEGKIKSSDT GKAQDGIRKP CSKGTKVFLR KGKVKKSPKV 480 TVTEDAPSSD KKLRPLEGKG TTPCIGSKGD GGVETSSNSV NILVGENKVG GTVKSTVSDK 540 TTATVGKSSS LKANKKKIIV RKVVKKVVSS PLNLGNSELA KKGDQLVKTD ISIRRASATP 600 VAEKRVLPLK MKVASASGDS VQGFDLECSP EESALILEDD KVNEASKGTG SKKVSTDVDP 660 GSSVSPKITR KKNSSTVALN SSSQGESNVD HGSTNAGNSV PGLHIISNIK EDHTEKPNET 720 ITSGSFGVED LNTRFYHNEN NINYGLSRSE DIKAHGGIVD IGSSSVAMPI STGFDCGSSS 780 SLEKNIVCDI GDANSGSRHV CTTPSSPVVD DRAKGGLPEA NCSVGSDKMP LLPCMEETYV 840 SGGSVYGDCS NHDKSTTSTP DIVYVNTGER NHEIGYDLVL SLGFSGKGIP NAVESVECRD 900 KYAANIHKRK VGVSELDLSS SALASISVGS ADVLTSANCV ESTICASEID LNPAEPMVGA 960 IGLLDVGLEH SRDKDSVLQG SSSNNTFPEI GGSADGKSPE KKKRKISTSS SSLTSPVISQ 1020 SVVVSDIFKS AAQIPSNFTD DLLQLEPEVK VSSIDDLHAE GIDLLHVNSS VAGPSEDVGS 1080 FSDACRGNPP KIDPSAFAES VAPSSPCLHP LELGGEQFSN GTPVSAISNH QSDAMDIEGD 1140 DRGKVLVDTS EEQNIISSEL TQCRIIPEHV SFGLDKRFAG IDADDDNHLP LKDDLPSTSN 1200 SLISGVDANE VSATNSNDEA MPAPDILCDV GSLSNLVLST STCKGHLFNS EEKTEKLSYD 1260 KPVIEGSCNS SAHVSDPQHS KTILKSKDVI QTNQSSAGKA GLLPSYDSES TISLNFLSGE 1320 TQGRKPLLSH VGPKSYPTRS SFVSSASKNA TSSTKITKPR TWRRTDNSSA HPLSGNKPSL 1380 SANPMQKQMP TYIRKGNSLV RKPTPVPAPP QGSHSSSSSV YRLKSGIVDE VKKGTGPNNR 1440 ADAVDLRTAG ANTTFERPTT PPLSSVTKVP KHISNSSGEC TYSPLAEPSA SDFNETTTNH 1500 PSSMEINDEL KSPEDGQKAL ETLNRNGSAN NLEVLNEQNE SGLIPSNEKR VTYVKPKSNQ 1560 LVATSDSDHT SIFDVDKNQS LSASSDGYYK KRKNQLIRTA LESHMKQAVT SSDDISNSVR 1620 EIAAKVISSR TFGKRRSNKV VAKTHKPSKF SLVWTPHSAR LSNNDGSSLC YPKVRPQLFP 1680 WKRMAHKRSF KLNSVSSYSS SLSTIGYNSC FRLLVASCFY PVVQENKRIH FFCRRKMLLL 1740 RKRNTVYTRS INGFSIHKSK VLSVGGSSLK WSKSIERHSR KANEEATLAV AEAERKKREQ 1800 STVSRTGKKG LSCHKVHGTE VRRGERIFRI GSVRYKMDSS RRSLQRISDD ASSCSASQQS 1860 ENSTKKSYVP RRLVIGNDEY VRIGNGNQLV RDPKKRTRVL ASEKVRWSLH TARLRLVKKR 1920 KYCQFFTRFG KCNKDDGKCP YIHDPSKISV CTKFLKGLCS NPNCKLTHKV IPERMPDCSY 1980 FLQGVSFLNY AFLFLILDMQ ILTELLAGLC TNENCPYRHV HVNPNASTCE GFLRGYCADG 2040 NECRKKHSYV CPNFEATGSC PLGSTCKLHH PKNRSKAKKS KRSMEHNTAR GRYFGIDISK 2100 PKRMVSERQQ EVLEEDNICF DGKFSDYISL GVSDDEVGGL HQANCDETSF GDDDSTDLQS 2160 EDLDELIKPI RIMSECKITE SFLVTESSSG KHLAIQ

Sequence ? help Back to Top

Protein Sequence Length: 2196 aa Download sequence Send to blast

MDPPSYIHHH HHHANHPRYV PFSPTPPLHP HCPPPQPLPP YQQSPTNLHP SRHHLPPQIR  60
PPPPPPLPQQ NQQQTYQPLP APPPPLPRQQ YSNHPPYNPH HPQYSSSSNF NSNPKPTHVS  120
HLFHDVPQRR LPEFDTRPDY WPENRVPRPH PVSNLDREAL YHQFDRRPAS PVIDRFMHDL  180
EGTSRFRDLE LNQREREGRV HNDRWISDRS SRDFGIVSIG FESNSNNSRF DHEATENIRW  240
GSRLREPLIE SGNDEINERD EMRVFSRKND YCDPEAERFS DKGSGREGNH EFNRTPWKQI  300
QKKSALLRIQ KVKLSHRSRE DERPHYLGYH NEGKTGTFRG KDSVLQSDHG MDEKKREGTP  360
VELDVSFKSN SLVAKAIVTS SPASNFDSNL MPRNTKIRKL TAFDMVSSSA QPNKGSESTA  420
KLGGSTSAVK SGSGPVDSKQ SEGKIKSSDT GKAQDGIRKP CSKGTKVFLR KGKVKKSPKV  480
TVTEDAPSSD KKLRPLEGKG TTPCIGSKGD GGVETSSNSV NILVGENKVG GTVKSTVSDK  540
TTATVGKSSS LKANKKKIIV RKVVKKVVSS PLNLGNSELA KKGDQLVKTD ISIRRASATP  600
VAEKRVLPLK MKVASASGDS VQGFDLECSP EESALILEDD KVNEASKGTG SKKVSTDVDP  660
GSSVSPKITR KKNSSTVALN SSSQGESNVD HGSTNAGNSV PGLHIISNIK EDHTEKPNET  720
ITSGSFGVED LNTRFYHNEN NINYGLSRSE DIKAHGGIVD IGSSSVAMPI STGFDCGSSS  780
SLEKNIVCDI GDANSGSRHV CTTPSSPVVD DRAKGGLPEA NCSVGSDKMP LLPCMEETYV  840
SGGSVYGDCS NHDKSTTSTP DIVYVNTGER NHEIGYDLVL SLGFSGKGIP NAVESVECRD  900
KYAANIHKRK VGVSELDLSS SALASISVGS ADVLTSANCV ESTICASEID LNPAEPMVGA  960
IGLLDVGLEH SRDKDSVLQG SSSNNTFPEI GGSADGKSPE KKKRKISTSS SSLTSPVISQ  1020
SVVVSDIFKS AAQIPSNFTD DLLQLEPEVK VSSIDDLHAE GIDLLHVNSS VAGPSEDVGS  1080
FSDACRGNPP KIDPSAFAES VAPSSPCLHP LELGGEQFSN GTPVSAISNH QSDAMDIEGD  1140
DRGKVLVDTS EEQNIISSEL TQCRIIPEHV SFGLDKRFAG IDADDDNHLP LKDDLPSTSN  1200
SLISGVDANE VSATNSNDEA MPAPDILCDV GSLSNLVLST STCKGHLFNS EEKTEKLSYD  1260
KPVIEGSCNS SAHVSDPQHS KTILKSKDVI QTNQSSAGKA GLLPSYDSES TISLNFLSGE  1320
TQGRKPLLSH VGPKSYPTRS SFVSSASKNA TSSTKITKPR TWRRTDNSSA HPLSGNKPSL  1380
SANPMQKQMP TYIRKGNSLV RKPTPVPAPP QGSHSSSSSV YRLKSGIVDE VKKGTGPNNR  1440
ADAVDLRTAG ANTTFERPTT PPLSSVTKVP KHISNSSGEC TYSPLAEPSA SDFNETTTNH  1500
PSSMEINDEL KSPEDGQKAL ETLNRNGSAN NLEVLNEQNE SGLIPSNEKR VTYVKPKSNQ  1560
LVATSDSDHT SIFDVDKNQS LSASSDGYYK KRKNQLIRTA LESHMKQAVT SSDDISNSVR  1620
EIAAKVISSR TFGKRRSNKV VAKTHKPSKF SLVWTPHSAR LSNNDGSSLC YPKVRPQLFP  1680
WKRMAHKRSF KLNSVSSYSS SLSTIGYNSC FRLLVASCFY PVVQENKRIH FFCRRKMLLL  1740
RKRNTVYTRS INGFSIHKSK VLSVGGSSLK WSKSIERHSR KANEEATLAV AEAERKKREQ  1800
STVSRTGKKG LSCHKVHGTE VRRGERIFRI GSVRYKMDSS RRSLQRISDD ASSCSASQQS  1860
ENSTKKSYVP RRLVIGNDEY VRIGNGNQLV RDPKKRTRVL ASEKVRWSLH TARLRLVKKR  1920
KYCQFFTRFG KCNKDDGKCP YIHDPSKISV CTKFLKGLCS NPNCKLTHKV IPERMPDCSY  1980
FLQGVSFLNY AFLFLILDMQ ILTELLAGLC TNENCPYRHV HVNPNASTCE GFLRGYCADG  2040
NECRKKHSYV CPNFEATGSC PLGSTCKLHH PKNRSKAKKS KRSMEHNTAR GRYFGIDISK  2100
PKRMVSERQQ EVLEEDNICF DGKFSDYISL GVSDDEVGGL HQANCDETSF GDDDSTDLQS  2160
EDLDELIKPI RIMSECKITE SFLVTESSSG KHLAIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fbs_C	4e-16	1923	2072	41	168	Cleavage and polyadenylation specificity factor subunit 4
6fuw_C	4e-16	1923	2072	41	168	Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.26203	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393935	1e-120	GQ393935.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0900 SSR marker CGR6091 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445973.1	0.0	PREDICTED: uncharacterized protein At1g21580
TrEMBL	A0A0D2TUZ8	0.0	A0A0D2TUZ8_GOSRA; Uncharacterized protein
STRING	Gorai.009G249000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5780	10	12