PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1842 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9863.12 Da PI: 9.7547 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1e-07 | 14 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + ++ +W ++a+ +g ++ ++++ ++ Gh_D05G1842 14 YWTPKQNKLFERALAVYDKDtpdRWQKVAAAVG-EKSVEEVRRHY 57 5********************************.9*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3E-6 | 11 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.58E-13 | 13 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-6 | 14 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.07E-6 | 15 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MASSITLSRD SNSYWTPKQN KLFERALAVY DKDTPDRWQK VAAAVGEKSV EEVRRHYEIL 60 VRDLMYIESG QIPIPNYKST GSNRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-31 | 8 | 83 | 4 | 79 | RADIALIS |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15196 | 1e-138 | ovule| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440620.1 | 8e-58 | PREDICTED: protein RADIALIS-like 6 | ||||
Refseq | XP_012440621.1 | 8e-58 | PREDICTED: protein RADIALIS-like 6 | ||||
Refseq | XP_012440622.1 | 8e-58 | PREDICTED: protein RADIALIS-like 6 | ||||
Refseq | XP_012440623.1 | 8e-58 | PREDICTED: protein RADIALIS-like 6 | ||||
Refseq | XP_016687583.1 | 8e-58 | PREDICTED: protein RADIALIS-like 6 | ||||
Refseq | XP_016733942.1 | 8e-58 | PREDICTED: protein RADIALIS-like 6 | ||||
Refseq | XP_017645104.1 | 8e-58 | PREDICTED: protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 2e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0D2UQS4 | 2e-56 | A0A0D2UQS4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8N4C0 | 2e-56 | A0A1U8N4C0_GOSHI; protein RADIALIS-like 6 | ||||
TrEMBL | A0A2P5YFL4 | 2e-56 | A0A2P5YFL4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G201200.1 | 3e-57 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 7e-37 | RAD-like 6 |