PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1827

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 434aa MW: 48020.6 Da PI: 7.0638

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1827	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	321	359	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Gh_D05G1827 321 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 359 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.071	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.82E-5	319	363	No hit	No description
SuperFamily	SSF47459	4.19E-11	319	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	323	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MEPENAHHQH HLQDQLLGSS SSLPISPCYG VSSTHSWTPT TALNSSEFNP SYNGDILHSR 60 LKNDMLVSPQ NSSMIQGWTN NEGSFTTHSC HGLHLPKIKD QLSESITRFT DILSDSTSSV 120 IDSHHLPPPN YLKNNEQRDL SDLSQKLLLK TISSGFPMFS TGPEFYSTTQ NCSIPRNSFL 180 PSRGSFSQIY PSINISSLNQ ASSSPNIPSS FDMNMEALDL LNPARFSRSS RFSYPSEDHD 240 NLDIYKEISP SFGLHYHHNL QQSSQRPVAY TPSKTSPFPT EITEAKRPSI LPETKPAAPT 300 TTTAKKSRLE SPASCPPFKV RKEKLGDRIA ALQQLVAPFG KTDTASVLME AIGYIKFLQN 360 QVETLSVPYM KLSRNKTSKS KQGGSTMEDE NEEDEARRDL RSRGLCLVPL SCMSYMTSES 420 GGGGIWPPPP NFTG

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MEPENAHHQH HLQDQLLGSS SSLPISPCYG VSSTHSWTPT TALNSSEFNP SYNGDILHSR  60
LKNDMLVSPQ NSSMIQGWTN NEGSFTTHSC HGLHLPKIKD QLSESITRFT DILSDSTSSV  120
IDSHHLPPPN YLKNNEQRDL SDLSQKLLLK TISSGFPMFS TGPEFYSTTQ NCSIPRNSFL  180
PSRGSFSQIY PSINISSLNQ ASSSPNIPSS FDMNMEALDL LNPARFSRSS RFSYPSEDHD  240
NLDIYKEISP SFGLHYHHNL QQSSQRPVAY TPSKTSPFPT EITEAKRPSI LPETKPAAPT  300
TTTAKKSRLE SPASCPPFKV RKEKLGDRIA ALQQLVAPFG KTDTASVLME AIGYIKFLQN  360
QVETLSVPYM KLSRNKTSKS KQGGSTMEDE NEEDEARRDL RSRGLCLVPL SCMSYMTSES  420
GGGGIWPPPP NFTG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586635	1e-137	JX586635.1 Gossypium hirsutum clone NBRI_GE20500 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016687600.1	0.0	PREDICTED: transcription factor bHLH110-like
TrEMBL	A0A2P5R4Y4	0.0	A0A2P5R4Y4_GOSBA; Uncharacterized protein
STRING	Gorai.009G199600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-72	bHLH family protein