PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1815
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 459aa    MW: 51756.2 Da    PI: 6.4007
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1815genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093814181954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LA+++gLt++q+++WF N R +
  Gh_D05G1815 381 FEHflHPYPTDSEKLMLASQTGLTKNQISNWFINARVR 418
                  664459******************************88 PP
2BELL102.14.1e-33244313372
         BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +el+++ akL+ lleeV+ rY++y++q++ v+ssFe  aglg+ak+Yt+lAl+a+SrhF +L+dai+++i
  Gh_D05G1815 244 NELRIRLAKLIGLLEEVELRYEKYYQQMEEVVSSFESLAGLGAAKSYTALALQAMSRHFGNLRDAIISHI 313
                  6899***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-30177311IPR006563POX domain
PfamPF075261.4E-33183309IPR006563POX domain
PROSITE profilePS5007112.017359422IPR001356Homeobox domain
SMARTSM003891.1E-9362426IPR001356Homeobox domain
CDDcd000863.17E-11362423No hitNo description
Gene3DG3DSA:1.10.10.602.6E-27367428IPR009057Homeodomain-like
SuperFamilySSF466891.84E-17367429IPR009057Homeodomain-like
PfamPF059209.8E-18379418IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MVSRDSPPNP TSSMLHHFIV SDPINSRNQF GGQPFDAYGS TLRGNHNTFP QSLGLLPTIH  60
SLGERMSRSM DLLPSPIVTD ESDISQTRHL MDLLGAANET NHQTQRLSLS LGSHMLDPSL  120
NSGITSPSYL LSRAEDREAC NPGVGNLRDD YNFTVNTFAS PSTSLHRSLL TTYGAAESFA  180
TAIVNSRYLK PTESLLHELV NIGGKNVDEN FFGKLYLGDR GGNARLSSEL KAEFCSNEML  240
LPENELRIRL AKLIGLLEEV ELRYEKYYQQ MEEVVSSFES LAGLGAAKSY TALALQAMSR  300
HFGNLRDAII SHINVIRRKF SHDLPRINRG LSQLSLFDRD SRQNRQYLQQ QLGMIPRQRQ  360
AWRPIRGLPE TSVAILRTWL FEHFLHPYPT DSEKLMLASQ TGLTKNQISN WFINARVRLW  420
KPMIEEMYKE EFEDSPQDSD PSFASSSMGR EGITDQAED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16368426563Homeobox protein Meis2
3k2a_B6e-16368426563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687614.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-97BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2P5R4W10.0A0A2P5R4W1_GOSBA; Uncharacterized protein
STRINGGorai.009G198500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-100BEL1-like homeodomain 11