PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1758

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 215aa MW: 23635.6 Da PI: 10.3836

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1758	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.3	2.1e-15	145	195	3	53
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 ++r +r++kNRe+A rsR+RK+a++ eLe kv+ L++eN +L+ + e++ Gh_D05G1758 145 NDRRHKRMIKNRESAARSRARKQAYTTELELKVAHLQEENAKLRRQQEKIL 195 689*****************************************8776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-12	143	207	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.266	145	194	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-13	146	194	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.94E-11	147	194	No hit	No description
CDD	cd14707	3.99E-28	147	197	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-14	147	194	No hit	No description
PROSITE pattern	PS00036	0	150	165	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEEVWKDISL ASLSDHPVDS ILSTRTKNPN FPSMILLNFL ATPINKEPPT PRTSGVSSND 60 TSSTEGPAPF VPGTILSLKS GFGSACRCTE TGDPMRPNLE VNARAGVPAA PSFSSYSSGF 120 RGFGSPEAFP SFCTKRAPES NENSNDRRHK RMIKNRESAA RSRARKQAYT TELELKVAHL 180 QEENAKLRRQ QEKILAARDQ VPKKNTLSRT LTAPF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016687682.1	1e-157	PREDICTED: protein FD-like
TrEMBL	A0A1U8JBJ3	1e-156	A0A1U8JBJ3_GOSHI; protein FD-like
STRING	Gorai.009G192500.1	1e-154	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1934	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	8e-47	bZIP family protein