PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1709

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 940aa MW: 104656 Da PI: 6.765

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1709	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.3e-28	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yFs ++kdAAk+Lgvc+T+LKr+CRq+GI+RWP+Rk++++ Gh_D05G1709 601 AEKTITLQVLRQYFSESLKDAAKSLGVCPTTLKRTCRQHGIERWPSRKLQKV 652 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.621	591	672	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-25	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.33E-22	827	915	No hit	No description
PROSITE profile	PS51745	25.483	829	912	IPR000270	PB1 domain
SMART	SM00666	1.8E-22	829	912	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.5E-21	829	909	No hit	No description
Pfam	PF00564	6.7E-18	830	911	IPR000270	PB1 domain
CDD	cd06407	2.34E-39	831	911	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MEDSILLPGM QLDYMDELLL DGCWLEASPT EESDFLDPNA FFDPTFEWPT SDSNGGDLGG 60 SLFQGEDPIS FLPGNPHMNE NHSQGAHLSH NLDDVNGVSC NLHGDCMTDA SELSRRWWIG 120 PRANPGPSTS VMQRLIGALN HIKDSAKETD VLVQLWLPVN KGGRRILTTS EQPFSLDPNS 180 QRLASYRNIS VKYQFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFRSDE YHRVDHAQQH 240 GVRGTFALPV FEQGNRTCLG VIEVVMTTEK IKIKPEMESV CKALEAVNLR SFTASSTRNI 300 QACNSSYQAA LPEIKEVLKR ACETHRLPLA QTWVPCMQLG KEGCPHSTDN YFHCVSTVDD 360 ACYIAKPNIR GFHEVCSEHH LLKGQGVAGR AFMTNQPCFS TDITSFKKTE YPLAHHAKMF 420 KLHAAVAIRF RCIHTGKADF VLEFFLPADC RDPEGQKEML NSLSIILQQV CCSLRVVTNE 480 ELEEDRDMGV SEVIASLDGI PCRKELSEEQ CTYHSEKYSR ENSSWTASLT EVNQSSSTST 540 AMKLRKEKPR ATWDEKISKV KQHKKQISLR GTVEGGDSTI NKISFSSATK RKTGQKRHSK 600 AEKTITLQVL RQYFSESLKD AAKSLGVCPT TLKRTCRQHG IERWPSRKLQ KVGNSLEKLQ 660 HVIDSVQGVS GAFHISSLYP NFSELASPRS SGKSTSSASV LGLNDKPKKT TILPEGGNFV 720 SQAATSNSPS SSCSQSSSSS HSCSSGTHHP SKFNISGNGG LIIGENSGNG ELKRVTSDTK 780 LHTLSQEGLK LFPRSHSPAS VKEQLISDSI QPVVTENNSQ IAQDLDAQTQ KVKVTYGDDK 840 IHFRMQSKWR LKDLLLEITR RFNIDDISGF DLKYLDDDSE WVLLTCDADL EECIDVCRWC 900 EGNTIRLLLQ ASHHHLDRSS VLKETLVSCF LHIALAEEVQ

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MEDSILLPGM QLDYMDELLL DGCWLEASPT EESDFLDPNA FFDPTFEWPT SDSNGGDLGG  60
SLFQGEDPIS FLPGNPHMNE NHSQGAHLSH NLDDVNGVSC NLHGDCMTDA SELSRRWWIG  120
PRANPGPSTS VMQRLIGALN HIKDSAKETD VLVQLWLPVN KGGRRILTTS EQPFSLDPNS  180
QRLASYRNIS VKYQFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFRSDE YHRVDHAQQH  240
GVRGTFALPV FEQGNRTCLG VIEVVMTTEK IKIKPEMESV CKALEAVNLR SFTASSTRNI  300
QACNSSYQAA LPEIKEVLKR ACETHRLPLA QTWVPCMQLG KEGCPHSTDN YFHCVSTVDD  360
ACYIAKPNIR GFHEVCSEHH LLKGQGVAGR AFMTNQPCFS TDITSFKKTE YPLAHHAKMF  420
KLHAAVAIRF RCIHTGKADF VLEFFLPADC RDPEGQKEML NSLSIILQQV CCSLRVVTNE  480
ELEEDRDMGV SEVIASLDGI PCRKELSEEQ CTYHSEKYSR ENSSWTASLT EVNQSSSTST  540
AMKLRKEKPR ATWDEKISKV KQHKKQISLR GTVEGGDSTI NKISFSSATK RKTGQKRHSK  600
AEKTITLQVL RQYFSESLKD AAKSLGVCPT TLKRTCRQHG IERWPSRKLQ KVGNSLEKLQ  660
HVIDSVQGVS GAFHISSLYP NFSELASPRS SGKSTSSASV LGLNDKPKKT TILPEGGNFV  720
SQAATSNSPS SSCSQSSSSS HSCSSGTHHP SKFNISGNGG LIIGENSGNG ELKRVTSDTK  780
LHTLSQEGLK LFPRSHSPAS VKEQLISDSI QPVVTENNSQ IAQDLDAQTQ KVKVTYGDDK  840
IHFRMQSKWR LKDLLLEITR RFNIDDISGF DLKYLDDDSE WVLLTCDADL EECIDVCRWC  900
EGNTIRLLLQ ASHHHLDRSS VLKETLVSCF LHIALAEEVQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21699	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446359.1	0.0	PREDICTED: protein NLP4-like isoform X1
Refseq	XP_012446360.1	0.0	PREDICTED: protein NLP4-like isoform X1
Refseq	XP_012446362.1	0.0	PREDICTED: protein NLP4-like isoform X1
TrEMBL	A0A0D2S3Y1	0.0	A0A0D2S3Y1_GOSRA; Uncharacterized protein
STRING	Gorai.009G187500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein