PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1655
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 353aa    MW: 39758.9 Da    PI: 6.559
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1655genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-092813152155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yps++++  LA+++gL+++q+ +WF N+R ++
  Gh_D05G1655 281 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 315
                  569*****************************885 PP
2ELK41.23.6e-14235256122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK qLlrKYsgyLgsLkqEF+
  Gh_D05G1655 235 ELKGQLLRKYSGYLGSLKQEFM 256
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-1998142IPR005540KNOX1
PfamPF037901.3E-20100138IPR005540KNOX1
SMARTSM012563.8E-19147198IPR005541KNOX2
PfamPF037915.4E-17151197IPR005541KNOX2
PROSITE profilePS5121311.174235255IPR005539ELK domain
SMARTSM011882.8E-8235256IPR005539ELK domain
PfamPF037895.8E-11235256IPR005539ELK domain
PROSITE profilePS5007113.362255318IPR001356Homeobox domain
SuperFamilySSF466898.13E-20257328IPR009057Homeodomain-like
SMARTSM003891.9E-13257322IPR001356Homeobox domain
CDDcd000861.20E-15258319No hitNo description
Gene3DG3DSA:1.10.10.605.3E-28260320IPR009057Homeodomain-like
PfamPF059208.6E-17275314IPR008422Homeobox KN domain
PROSITE patternPS000270293316IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEGVSNSTSC MMAFGHNSNG LCPMTVMPLT AIHPHDQHQY YHHNSDFNSL LLPLAPTNNQ  60
DQNHNSSSGS SMIIDDQSNT TNNNTGCYFM ESNDGSSSSV KAKIMAHPLY HRLVAAYVNC  120
RKVGAPPEVV ARLEQVCASA ATMGPSTIGC VGEDPALDQF MEAYSEMLAK YEQELSKTFK  180
DAMLFLQSVE CQFKALTVSP STSACGDAVN LNGSSEEEAD VNNHHFIDPL AEDRELKGQL  240
LRKYSGYLGS LKQEFMKKRK RGKLPKEARQ KLLDWWTKHY KWPYPSESQK LALAESTGLD  300
QKQINNWFIN QRKRHWKPSE DMQFVVMEAT YPHYFMDNIL GNPFPMDLSH TLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250259LKQEFMKKRK
2256263KKRKRGKL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016688176.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-145HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1U8JCY90.0A0A1U8JCY9_GOSHI; homeobox protein SBH1-like
STRINGGorai.009G181500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-132KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]