PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 565aa MW: 61429.6 Da PI: 7.2455 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 323 | 381 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gh_D05G1645 323 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 381 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-33 | 307 | 383 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-28 | 315 | 383 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.677 | 317 | 383 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 322 | 382 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 324 | 381 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MEKGWGLTLG NSDPVSSFFH NKTNSTAGPV FRLKQHPDML QFPVSLAGSR EDRPGTSSSS 60 SPASDDNRVA VDEVDFFSNK KHGVVDEKKT GTVIVKTETT SHGGDGPSSD HLDVNTGLHL 120 LTVDDGKSSE TEDKREKNAL AELQAEFKRV NVENQKLRDM ISHVSNNYTA LQMHLVTLMQ 180 QHRNREAKST QEHEIQEVKS EVKKDEVVVP RQFMELVPHS GTAETDEMTH PSSEERTRSG 240 SPPNNVEVAS KDSIKGRNEI SQFNQEERDG KRIDREESPE SDGWGPNKAQ KLNPAKPIEQ 300 STEVTMRKAR VSVRARSEAP MISDGCQWRK YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV 360 QRCAEDRTIL ITTYEGNHNH PLPPAAMAMA STTSAAASML LSGSMPSADG IMNPNLLART 420 ILPSSSMATI SASAPFPTVT LDLTQSPNPL KFQRPPPQFD GPFPGQPQNL ASLSSPQLPQ 480 AFGQPPFNQS KFSGLQLSKD MGSSQLGHPQ LQQPQLPTLA DKVSAATAAI TNDPSFTAAL 540 AAAITSIIGG ARPNSSSNTS NNDNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 309 | 385 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438461 | 0.0 | KM438461.1 Gossypium aridum WRKY31 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016688187.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-152 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1U8JCZ4 | 0.0 | A0A1U8JCZ4_GOSHI; probable WRKY transcription factor 31 | ||||
STRING | Gorai.009G180400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-127 | WRKY family protein |