PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27798.4 Da PI: 5.9255 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.2e-07 | 94 | 143 | 5 | 54 |
HHHHHHHHHHHHHHH...HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsa...feeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++ f eL ++l + +s K++Ka iL A + + +L Gh_D05G1601 94 KACREKMRRDKLNDRhvlFLELGSILEPG---RSSKVDKAVILVDAARMVTQL 143 678***********77769*********9...9*************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.242 | 89 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-5 | 93 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-5 | 95 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.76E-10 | 95 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-10 | 96 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.21E-6 | 97 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MISRRQPGAE DLVSSDNPNA WIFDDYGLLE DIPVPGGDLP SLDPSAPIWS SPSLTCSTPL 60 SVEFTESFGN SDNLNETGSR KRMRSGSSSA SGSKACREKM RRDKLNDRHV LFLELGSILE 120 PGRSSKVDKA VILVDAARMV TQLRDEAQKL RESNESLREK INELKAEKNE LRDEKQRLKT 180 EKDNLERQGK ALGSQPGFIP QAPAIPTPFS TPSQVVGGKL VPFVGYPGVS MWQFLPPAAV 240 DTSQDHMLRP PVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.7201 | 0.0 | boll| ovule| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016688249.1 | 1e-173 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 6e-82 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0B0NRL3 | 0.0 | A0A0B0NRL3_GOSAR; Transcription factor ILR3-like protein | ||||
STRING | Gorai.009G176000.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 8e-73 | bHLH family protein |